RetrogeneDB ID: | retro_ocun_1871 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | X:7619520..7620027(+) | ||
Located in intron of: | ENSOCUG00000016386 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YY2 | ||
Ensembl ID: | ENSOCUG00000026938 | ||
Aliases: | None | ||
Description: | YY2 transcription factor [Source:HGNC Symbol;Acc:31684] |
Percent Identity: | 83.53 % |
Parental protein coverage: | 73.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPHKGCTKMFRDNSAMR |
..S..DYSEY.TGKKLPPGGIP..DLSDPKQLAEFA.MKPRK...D...RT.ACPHK.C.KMFRDN.AMR | |
Retrocopy | DGSSSDYSEYFTGKKLPPGGIPVVDLSDPKQLAEFAKMKPRK-PQDSSSRTVACPHKDCEKMFRDNCAMR |
Parental | KHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV |
KHLHTHGPRVHVC.ECGKAF.E.SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD.P.V | |
Retrocopy | KHLHTHGPRVHVCTECGKAFIENSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDKPFV |
Parental | CPFDGCNKKFAQSTNLKSHILTHAKAKNNQ |
CP.D.CNKKFAQSTNLKSHILTHAK.K..Q | |
Retrocopy | CPYDACNKKFAQSTNLKSHILTHAKNKASQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 21 .96 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .38 RPM |
SRP017611_liver | 0 .15 RPM | 18 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011146 | 1 retrocopy | |
Bos taurus | ENSBTAG00000020819 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016853 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000020809 | 2 retrocopies | |
Equus caballus | ENSECAG00000005805 | 1 retrocopy | |
Homo sapiens | ENSG00000100811 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000026332 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000002931 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021264 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000026938 | 1 retrocopy |
retro_ocun_1871 ,
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