RetrogeneDB ID: | retro_cpor_1543 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_957:32714..33386(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004251 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.78 % |
Parental protein coverage: | 69.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDP |
MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDP | |
Retrocopy | MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDP |
Parental | QTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY |
QTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY | |
Retrocopy | QTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY |
Parental | NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVVQKYHTINGHNCEVKKALSKQEMQS |
NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV.QK.HTINGH.CEVKKALSKQEMQS | |
Retrocopy | NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV-QK*HTINGHSCEVKKALSKQEMQS |
Parental | AGSQRGRGGGSGNVL |
AGSQRGRGGGSGN.. | |
Retrocopy | AGSQRGRGGGSGNFM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .95 RPM | 46 .47 RPM |
SRP017611_kidney | 6 .28 RPM | 60 .20 RPM |
SRP017611_liver | 2 .87 RPM | 37 .52 RPM |
SRP040447_lung | 3 .78 RPM | 88 .50 RPM |
SRP040447_skeletal_muscle | 1 .14 RPM | 28 .66 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011920 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000004251 | 3 retrocopies |
retro_cpor_1516, retro_cpor_1543 , retro_cpor_65,
|
Cavia porcellus | ENSCPOG00000015619 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000020972 | 1 retrocopy | |
Ficedula albicollis | ENSFALG00000003215 | 1 retrocopy | |
Gallus gallus | ENSGALG00000009250 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019803 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014103 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002743 | 2 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000003011 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012676 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000001556 | 11 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000018255 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014225 | 3 retrocopies | |
Xenopus tropicalis | ENSXETG00000001806 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000000439 | 1 retrocopy |