RetrogeneDB ID: | retro_cpor_65 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:23722331..23723420(+) | ||
Located in intron of: | ENSCPOG00000013925 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000011301 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004251 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.42 % |
Parental protein coverage: | 66.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM |
EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM | |
Retrocopy | EGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM |
Parental | CARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS |
CARPHKVDGRVVEPKRA.SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS | |
Retrocopy | CARPHKVDGRVVEPKRAISREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQS |
Parental | GKKRGFAFVTFDDHDTVDKIVVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNVLIFLGDVFE |
GKKRGFAFVTFDDHDTVDKI.VVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGN.....G.... | |
Retrocopy | GKKRGFAFVTFDDHDTVDKI-VVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGG |
Parental | SGGNF |
.GGNF | |
Retrocopy | GGGNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 23 .93 RPM | 46 .47 RPM |
SRP017611_kidney | 27 .74 RPM | 60 .20 RPM |
SRP017611_liver | 16 .06 RPM | 37 .52 RPM |
SRP040447_lung | 63 .96 RPM | 88 .50 RPM |
SRP040447_skeletal_muscle | 21 .04 RPM | 28 .66 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011920 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000004251 | 3 retrocopies |
retro_cpor_1516, retro_cpor_1543, retro_cpor_65 ,
|
Cavia porcellus | ENSCPOG00000015619 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000020972 | 1 retrocopy | |
Ficedula albicollis | ENSFALG00000003215 | 1 retrocopy | |
Gallus gallus | ENSGALG00000009250 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019803 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014103 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002743 | 2 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000003011 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012676 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000001556 | 11 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000018255 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014225 | 3 retrocopies | |
Xenopus tropicalis | ENSXETG00000001806 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000000439 | 1 retrocopy |