RetrogeneDB ID: | retro_dnov_1712 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_27243:8199..8837(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSDNOG00000011654 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 68.22 % |
Parental protein coverage: | 57.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EALELLKTAIQAAGYPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARHISGEKLGDLYKSFIKNYPVVS |
.ALEL.K.AI..AGY.DKVV.GM...ASEF.R.GKYDLD.KSPDD..R.I...K..DLY..FIK.Y.V.. | |
Retrocopy | DALELHKNAIGKAGYTDKVVTGMNITASEFFRSGKYDLDLKSPDDSSRYITPNKSADLYEPFIKDYLVEF |
Parental | IEDPFDQDDWATWTSFLTGVNIQIV-GDDLTVTNPKRIAQAVEKKACNCLLLKVNQIGSVTESIQACKLA |
.EDPFDQDDW.TW..F.T...I..V.GDDLTVTN.K.IA.A...K.CNC.LLKVNQ.GSVTES.Q..KLA | |
Retrocopy | FEDPFDQDDWETWKNFTTSAGILVV<GDDLTVTNTKQIAKAMREKSCNCPLLKVNQTGSVTESLQVYKLA |
Parental | QSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGNKAVFAGRKFRN |
.SN.WG..VSH.SGETEDTF.ADLVVG.CTGQIKTG.PC.SE.LAKYNQL.R.EE.LG.KA.FAGR.F.N | |
Retrocopy | ESNRWGITVSHPSGETEDTFTADLVVGFCTGQIKTGTPCQSEHLAKYNQLLRTEEELGSKAKFAGRQF*N |
Parental | PKAK |
P.AK | |
Retrocopy | PLAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 23 .73 RPM |
SRP012922_cerebellum | 0 .00 RPM | 17 .18 RPM |
SRP012922_heart | 0 .00 RPM | 1074 .31 RPM |
SRP012922_kidney | 0 .00 RPM | 9 .86 RPM |
SRP012922_liver | 0 .00 RPM | 2 .94 RPM |
SRP012922_lung | 0 .15 RPM | 52 .23 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 4677 .95 RPM |
SRP012922_spleen | 0 .00 RPM | 8 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies |
retro_dnov_1712 , retro_dnov_75,
|
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |