RetrogeneDB ID: | retro_meug_965 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold246112:384..1654(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSMEUG00000007915 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 67.29 % |
Parental protein coverage: | 98.16 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | REILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLXXXXXXXXXXXXXXX |
REI.DSRGN.TVEVDLHT.KG.F.AA.PSG.ST.I.E.LE..D..K..Y.GKGV................ | |
Retrocopy | REIFDSRGNTTVEVDLHTEKGQF*AAMPSGVSTDIHESLEF*DNEKICYIGKGVSKAVEHISKTNALTLI |
Parental | XXKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLVLPVP |
..KL.VV.Q....K.MIE..G.ENKSKF.ANAILGVSLAVCKA.AA.KG...Y.HIADLAGN....LPVP | |
Retrocopy | SKKLNVVEQ--INKLMIEMEGIENKSKFDANAILGVSLAVCKARAADKGISQYCHIADLAGNNEVILPVP |
Parental | AFNVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAEVYHHLKGVIKSKYGKDATNVGDEGGFAPNIL |
AF.....GSHAGNKLAM.EFMI.PVGAA.F.EAM.IGAEVYH.LK..IK.KYG.DAT...DEG.F.PNIL | |
Retrocopy | AFSMNTSGSHAGNKLAM*EFMIFPVGAANFKEAMHIGAEVYHNLKSLIKQKYG*DATIIKDEGSFVPNIL |
Parental | ENNEALEL-LKTAIQAAGYPDKVVIGMDVAASEFYKNGKYDLDFKSPDDPARHISGEKLGELYKSFIKNY |
.N.EAL.L..K.AI..AGY.DKVV.GMDVAASEF...GKYDLDFKS.DD..R.IS...LG.LYKS.I..Y | |
Retrocopy | KNKEALDL<AKNAIGKAGYTDKVVTGMDVAASEFFQYGKYDLDFKSLDDSSRYISPSQLGVLYKSCIQDY |
Parental | PVVSIEDPFDQDDWATWTKFLSGVDIQIVGDDLTVTNPKRIAQAVEKRACNCLLLKVNQIGSVTE-SIQA |
PVVSIED.F.QDD...W..F.....IQ.VGDDL.VTNPK.....V.K.ACNCLLLKVNQIGSVT..S.QA | |
Retrocopy | PVVSIEDVFGQDDREAWKNFTATANIQVVGDDLPVTNPKCTEKTVNKKACNCLLLKVNQIGSVTD<SLQA |
Parental | CKLAQTNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAVFAGR |
CKLAQ.N..GVMVS..SGETEDTFIADLVVGLCTGQIKTG.PC.SE.L.KYNQL.RIEE.LG.KA.FA.R | |
Retrocopy | CKLAQSNE*GVMVSPHSGETEDTFIADLVVGLCTGQIKTGVPCQSEHLVKYNQLLRIEEELGSKAKFAER |
Parental | KFRNPKAK |
.FRNP.AK | |
Retrocopy | NFRNPQAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015802 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965 , retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |