RetrogeneDB ID: | retro_meug_170 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_5044:52546..53843(-) | ||
Located in intron of: | ENSMEUG00000013785 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSMEUG00000007915 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 66.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGA-STGIYEALELRDGDKSRYLGKGVLXXXXXX |
M...KI.AREI.DS.GNPT.EVDL....G.F.A.VPS...ST.I.EALEL.D.D...Y.GKGV....... | |
Retrocopy | MSIYKIQAREIFDSCGNPTIEVDLSIETGQF*ATVPSDS<STSIPEALEL*DNDNTHYTGKGVSKAVKDI |
Parental | XXXXXXXXXXXKLSVVDQEKVDKFMIELDGTENKSKFGANAI-LGVSLAVCKAGAAEKGVPLYRHIADLA |
...........KL.VV.QEK..K.MIE.D.TENK.KFGAN.I..G.....CK.GAAEK.V.LY.HIADLA | |
Retrocopy | NKTIAPTLISKKLNVVEQEKINKLMIEMDSTENKPKFGANII<IG-NVSDCKVGAAEKNVSLYCHIADLA |
Parental | GNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAEVYHHLKGVIKSKYGKDATNVG |
GN....LP.PAFNVINGGSHAGNKLAMQEFMILPVGAA.F.EAM.I.AEVY..LK.V.K.KYG.DATN.G | |
Retrocopy | GNNEVILPAPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMYIEAEVYPNLKSVSKQKYGQDATNIG |
Parental | DEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEFYKNGKYDLDFKSPDDPARHISGEKLGE |
DEGG..PNILEN.EAL.LLK.AI..A.Y.DKVVIG.DVAASEF...GKY.LDFKSPDD..R.IS...LG. | |
Retrocopy | DEGGYSPNILENKEALDLLKNAIGKASYTDKVVIGTDVAASEFFQSGKYNLDFKSPDDFSRYISPSELGD |
Parental | LYKSFIKNYPVVSIEDPFDQDDWATWTKFLSGVDIQIVGDDLTVTNPKRIAQAVEKRACNCLLLKVNQIG |
LYKSFIK.YPVVSIED.FDQDD...W..F.....IQ.V.DDLTVTN.K.I..AV...ACNCLLLKVNQIG | |
Retrocopy | LYKSFIKDYPVVSIEDSFDQDD*EVWKNFTIIPGIQVVEDDLTVTNSKHIDKAVNRKACNCLLLKVNQIG |
Parental | SVTESIQACKLAQTNGWGVMVS-HRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMR-IEEA |
S.TES...CK.AQ...WG.M.S.H.S.ETEDTFIADLVVGLCTGQIKTGAPC..ERL.KYNQ..R..EE. | |
Retrocopy | SATESLSVCKVAQSSRWGIMFS<HYSEETEDTFIADLVVGLCTGQIKTGAPCQCERLVKYNQPLR>FEEE |
Parental | LGDKAVFAGRKFRNPKAK |
LG..A.FAGR.FRNP.AK | |
Retrocopy | LGSRAKFAGRNFRNPWAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015802 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170 , retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |