RetrogeneDB ID: | retro_meug_803 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold19181:6558..7850(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSMEUG00000007915 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 67.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLXXXXXXX |
M...KI..REI.DS.GNPTV.VDL.T.K...R......ASTGI.EALEL.D.DK..Y..K.V........ | |
Retrocopy | MSIYKIQPREIFDSHGNPTVKVDLYTEK---RSIPSCCASTGIQEALELQDNDKTCYMRKSVSKVVEHIN |
Parental | XXXXXXXXXXKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGN |
..........KL.VV.Q.K..K.MIE.DGTENKSKF.ANAILGVSLAVCKA..AEK.V.L..HIADLAGN | |
Retrocopy | KIIAPTLISKKLNVVEQKKINKLMIEMDGTENKSKFDANAILGVSLAVCKARVAEKVVSLHHHIADLAGN |
Parental | PDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAEVYHH-LKGVIKSKYGK-DATNVG |
....LPVPAFN.INGGSHAG.KLAMQEFMILP.GAA.F.EAMRI.AEV.H..LK.VIK.KY...DAT.VG | |
Retrocopy | DEVILPVPAFNMINGGSHAGSKLAMQEFMILPIGAANFKEAMRIRAEV*HN<LKSVIKQKYDR<DATTVG |
Parental | DEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEFYKNGKYDLDFKSPDDPARHISGEKLGE |
DEG.FAPNILEN.E.L.LLK..I..AG..DKV.IGMDVAASEF...GKYDLDFKSPDD..R.IS...LG. | |
Retrocopy | DEGSFAPNILENKETLDLLKNTIGKAGSADKVIIGMDVAASEFFQSGKYDLDFKSPDDSSRYISPSELGD |
Parental | LYKSFIKNYPVVSIEDPFDQDDWATWTKFLSGVDIQIVGDDLTVTNPKRIAQAVEKRACNCLLLKVNQIG |
LYK.FIK.YPVVSIEDPFDQD.W..W..F.....IQ.VGDDLTVTNPK.I...V...ACNCLLLKVNQIG | |
Retrocopy | LYKIFIKDYPVVSIEDPFDQDNWEAWKNFNATAGIQVVGDDLTVTNPKQIEKTVNEKACNCLLLKVNQIG |
Parental | SVTESIQACKLAQTNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGA-PCRSERLAKYNQLMRIEEAL |
S.TES.QACKLAQ.NGW..MVSH.SGETEDTFIADLVVG.CTGQIK.G..PC.SE.LAKYNQL.RI.E.L | |
Retrocopy | SMTESLQACKLAQSNGW*IMVSHCSGETEDTFIADLVVGFCTGQIKIGT>PC*SEHLAKYNQLFRIKEEL |
Parental | GDKAVFAGRKFRNPKAK |
G.K..FAG..FRNP.AK | |
Retrocopy | GSKVKFAGKNFRNP*AK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015802 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803 , retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |