RetrogeneDB ID: | retro_meug_976 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold24990:2758..3519(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSMEUG00000007915 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 74.12 % |
Parental protein coverage: | 58.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MRIGAEVYHHLKGVIKSKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEF |
..IGAEVY..LK.V.K.KYG.DATN.GDEG.FAPNILEN.EAL.LLK.AI..AGY.DKVVI.MDVAASEF | |
Retrocopy | LHIGAEVYDNLKNVSKQKYGQDATNIGDEGSFAPNILENEEALDLLKNAIDKAGYTDKVVIDMDVAASEF |
Parental | YKNGKYDLDFKSPDDPARHISGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTKFLSGVDIQIVGDDLT |
...GKYDLDFKSPD...R.IS...LG.LYKSFIK.YPV.SIEDPFDQDDW.TW..F.....I..VGDDLT | |
Retrocopy | FQSGKYDLDFKSPDASSRYISPSELGALYKSFIKDYPVLSIEDPFDQDDWETWKNFTTTSGIWVVGDDLT |
Parental | VTNPKRIAQAVEKRACNCLLLKVNQIGSVTESIQACKLAQTNGWGVMVS-HRSGETEDTFIADLV-VGLC |
VTNPK....AV...ACNCLLLKVNQIGSVTES.QACKL.Q.NGWGVMVS.H.SGETEDTFIADLV..GL. | |
Retrocopy | VTNPKGTEKAVNEKACNCLLLKVNQIGSVTESFQACKLTQANGWGVMVS>HDSGETEDTFIADLV>GGLS |
Parental | TGQIKTGAPCRSERLAKYNQLMRIEEALGDKAVFAGRKFRNPKAK |
TGQIKTG.PCRSE.LAKYNQL.R.EE.LG..A.F.GR.FRNP.AK | |
Retrocopy | TGQIKTGTPCRSEHLAKYNQLLRTEEELGSTAKFVGRNFRNP*AK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015802 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976 ,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |