RetrogeneDB ID: | retro_meug_1905 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold7075:11628..12689(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSMEUG00000007915 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 72.68 % |
Parental protein coverage: | 81.57 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLVLPVPAF |
KL.VV.QE...K.MIE.D.TE.KSKFGANAILGV.LAVCKA.AA.KGV.LY.HI.DLAGN....LP..AF | |
Retrocopy | KLNVVEQENTCKLMIEMDVTESKSKFGANAILGVALAVCKAEAADKGVSLYHHISDLAGNDEVILPILAF |
Parental | NVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAEVYHHLKGVIKSKYGKDATNVGDEGGFAPNILEN |
NVINGGSHAGNKLAMQEFMILPVGAA.F.EAM.IGAEVYH.LK.V...KYG.DATN..DEGGFA.NILEN | |
Retrocopy | NVINGGSHAGNKLAMQEFMILPVGAANFKEAMHIGAEVYHNLKNVMRQKYGQDATNIVDEGGFASNILEN |
Parental | NEALELLKTAIQAAGYPDKVVIGMDVAASEFYKNGKYDLDFKSPDDPARHISGEKLGELYKSFIKNYPVV |
.E.L.LLK..I..AGY.D.VVIGMDVAASEF...GKYDLDFKSPDD..R.IS...LG.LYKSF.K.YPVV | |
Retrocopy | KETLDLLKNVIGKAGYTD*VVIGMDVAASEFFCSGKYDLDFKSPDDSSRYISPSELGDLYKSFMKDYPVV |
Parental | SIEDPFDQDDWATWT-KFLSGVDIQIVGDDLTVTNPKRIAQAVEKRACNCLLLKVNQIGSVTESIQACKL |
S.EDP.DQDDW..W...F.....IQ.VGDDLT.TNPK....AV...ACN.LLLKVNQI..VTES.Q.CKL | |
Retrocopy | STEDPVDQDDWEAWK<NFTATASIQVVGDDLTMTNPK*TEKAVNEKACNYLLLKVNQID*VTESLQVCKL |
Parental | AQTNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAVFAGRKFR |
AQ.N..GVMVSH.SGETE.TFIADLVVGLCTG.IKTGAPC.SE.LA.Y.QL.RIEE.LG.KA.FAGR.FR | |
Retrocopy | AQSNR*GVMVSHCSGETENTFIADLVVGLCTGHIKTGAPCQSECLANYSQLLRIEEELGRKAKFAGRNFR |
Parental | NPKAK |
N..AK | |
Retrocopy | NLWAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015802 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905 , retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |