RetrogeneDB ID: | retro_dnov_421 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4552:53917..54187(-) | ||
Located in intron of: | ENSDNOG00000019432 | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000019433 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSDNOG00000007856 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 100. % |
Parental protein coverage: | 79.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNI |
PAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNI | |
Retrocopy | PAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNI |
Parental | CQFLVEIGLAKDDQLKVHGF |
CQFLVEIGLAKDDQLKVHGF | |
Retrocopy | CQFLVEIGLAKDDQLKVHGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 1 .17 RPM | 129 .71 RPM |
SRP012922_cerebellum | 2 .34 RPM | 132 .66 RPM |
SRP012922_heart | 2 .78 RPM | 152 .68 RPM |
SRP012922_kidney | 1 .37 RPM | 162 .36 RPM |
SRP012922_liver | 1 .24 RPM | 167 .66 RPM |
SRP012922_lung | 4 .12 RPM | 212 .90 RPM |
SRP012922_quadricep_muscle | 3 .12 RPM | 339 .42 RPM |
SRP012922_spleen | 1 .26 RPM | 177 .87 RPM |