RetrogeneDB ID: | retro_fcat_1555 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:61395078..61395356(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030904 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF1 | ||
Ensembl ID: | ENSFCAG00000024455 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] |
Percent Identity: | 80.85 % |
Parental protein coverage: | 82.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DDLLPAGTEDYIHIRIQQRNGRKTLT-TVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGD |
DDLLPAGTEDYI..RIQQRNGR.TLT.TVQ.I.DDY.KKK.VKAF.KK.ACNGT.IEH..YGEVI.LQ.D | |
Retrocopy | DDLLPAGTEDYILTRIQQRNGRNTLT<TVQRITDDYNKKKVVKAFMKKSACNGTAIEHTQYGEVILLQSD |
Parental | QRKNICQFLVEIGLAKDDQLKVHG |
Q.KNICQFLVE.G.AKDDQLKVHG | |
Retrocopy | QHKNICQFLVETGPAKDDQLKVHG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 105 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 141 .81 RPM |
SRP017611_liver | 0 .00 RPM | 113 .52 RPM |