RetrogeneDB ID: | retro_dnov_748 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_104287:6991..7552(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SBDS | ||
Ensembl ID: | ENSDNOG00000016904 | ||
Aliases: | None | ||
Description: | Shwachman-Bodian-Diamond syndrome [Source:HGNC Symbol;Acc:19440] |
Percent Identity: | 87.7 % |
Parental protein coverage: | 74.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLVSAF |
PTNQIRLTNVAVVRMKR..KRFEIACYKNKVVGWRSG.EKDLDEVL.THSVFVNVSKGQVAKKE.L.SAF | |
Retrocopy | PTNQIRLTNVAVVRMKRGRKRFEIACYKNKVVGWRSGMEKDLDEVL*THSVFVNVSKGQVAKKEELISAF |
Parental | GTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVK |
.TDD.TE.CKQILTK.EVQ...KERH.QLEQMFRDIATIVADKCVNPETKRPY.VI.I.RAMKD.HYSVK | |
Retrocopy | DTDDRTEVCKQILTKEEVQILYKERHRQLEQMFRDIATIVADKCVNPETKRPYAVIFIDRAMKDTHYSVK |
Parental | TNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPLNEGKKLKEKLKP |
TNKSTKQQALEVIKQL.EKMKIERAHM.LRFI.P.N.GKKLKEKLKP | |
Retrocopy | TNKSTKQQALEVIKQLEEKMKIERAHMILRFIIPVNKGKKLKEKLKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 104 .04 RPM |
SRP012922_cerebellum | 0 .00 RPM | 84 .54 RPM |
SRP012922_heart | 0 .00 RPM | 44 .78 RPM |
SRP012922_kidney | 0 .00 RPM | 127 .59 RPM |
SRP012922_liver | 0 .00 RPM | 73 .07 RPM |
SRP012922_lung | 0 .00 RPM | 100 .80 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 89 .14 RPM |
SRP012922_spleen | 0 .00 RPM | 74 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003795 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004283 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016904 | 1 retrocopy |
retro_dnov_748 ,
|
Loxodonta africana | ENSLAFG00000008763 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006644 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025337 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009011 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008721 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000000888 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022203 | 1 retrocopy |