RetrogeneDB ID: | retro_chof_623 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_127454:222..627(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SBDS | ||
Ensembl ID: | ENSCHOG00000003795 | ||
Aliases: | None | ||
Description: | Shwachman-Bodian-Diamond syndrome [Source:HGNC Symbol;Acc:19440] |
Percent Identity: | 79.26 % |
Parental protein coverage: | 53.82 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | PTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAF |
PTNQI.LTNVA.V..K.AGK.F.I.CYKNKV.GW.SGVE.DLDEVLQ.HSVFVN.SKGQVAK.EDLI.AF | |
Retrocopy | PTNQILLTNVAMVQKKHAGKHFKITCYKNKVIGW*SGVEQDLDEVLQPHSVFVNASKGQVAK*EDLICAF |
Parental | GTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV-PETKRPYTVILIERAMKDI |
GTDDQTEICKQ.L.KGEV.VSDKE.HT.LEQMFRDIA.I..DKCV.PETKR.Y.VILI.R.MKDI | |
Retrocopy | GTDDQTEICKQVLSKGEVPVSDKEWHT*LEQMFRDIARIIGDKCVNPETKRLYIVILIKRVMKDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003795 | 2 retrocopies |
retro_chof_1999, retro_chof_623 ,
|
Callithrix jacchus | ENSCJAG00000004283 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016904 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008763 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006644 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025337 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009011 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008721 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000000888 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022203 | 1 retrocopy |