RetrogeneDB ID: | retro_rnor_686 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:45717396..45718129(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sbds | ||
Ensembl ID: | ENSRNOG00000000888 | ||
Aliases: | None | ||
Description: | Ribosome maturation protein SBDS [Source:UniProtKB/Swiss-Prot;Acc:Q5RK30] |
Percent Identity: | 84.21 % |
Parental protein coverage: | 97.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWR-SGVEKDLDEVLQTHSVFVNVSKGQVAKKED |
SIFTPTNQI.LT.VA.V..KRGGKRFE.ACYKNKV..WR.SG.EK.LDEVLQTHSVFVNVSKGQ..KKED | |
Retrocopy | SIFTPTNQI*LTSVAMVWVKRGGKRFEVACYKNKVFSWR>SGMEKGLDEVLQTHSVFVNVSKGQIVKKED |
Parental | LISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRP--YTVILIERAMK |
.IS..GTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVA.K.V.....R...YTVILIERAM. | |
Retrocopy | FIS--GTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVAHKYV*TQKQRDPTYTVILIERAME |
Parental | DIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLPVNEGKKLKEKLKPLMKVVESEDYSQQLEI |
DIHYSVK.NKSTKQ.ALE.IKQLKEKMK.ERAHMR.RF.L.VNEGKKLKEKLKPLMKVVESED.SQ.LEI | |
Retrocopy | DIHYSVKLNKSTKQRALEEIKQLKEKMKTERAHMRMRFILRVNEGKKLKEKLKPLMKVVESED*SQRLEI |
Parental | VCLIDPGCFREIDELIKKETKGKGSLEVLSLKDVEEG |
VCLIDPGCFRE.DELIKKETKGKGS.EVL.LKDVEEG | |
Retrocopy | VCLIDPGCFRETDELIKKETKGKGSVEVLCLKDVEEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 74 .04 RPM |
SRP017611_liver | 0 .00 RPM | 20 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003795 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004283 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016904 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008763 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006644 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025337 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009011 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008721 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000000888 | 1 retrocopy |
retro_rnor_686 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000022203 | 1 retrocopy |