RetrogeneDB ID: | retro_itri_1763 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393732.1:146841..147186(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SBDS | ||
Ensembl ID: | ENSSTOG00000022203 | ||
Aliases: | None | ||
Description: | Shwachman-Bodian-Diamond syndrome [Source:HGNC Symbol;Acc:19440] |
Percent Identity: | 68.38 % |
Parental protein coverage: | 54.67 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 0 |
Parental | ETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKDKLKP |
ETK.PYTVIL.ER.MKDI.YSVK..KST..QAL.VIK.LK..MKI.....RL.FI.PVNE.KKLK.KLK. | |
Retrocopy | ETKKPYTVILVERGMKDI*YSVKLSKSTE*QAL*VIK*LKGEMKIKCVDRRLWFI-PVNERKKLKEKLKS |
Parental | LIKVIESEDYGQQLEIVCLIDPGCFREIDELIQKETKGKGSLEVLNL |
LIKVIES..........CLIDPGCF.EI.ELI.KE..GKGSLEVLNL | |
Retrocopy | LIKVIESKTRASG*KL-CLIDPGCF*EIGELIKKERNGKGSLEVLNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003795 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004283 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016904 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008763 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006644 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025337 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009011 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008721 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000000888 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022203 | 1 retrocopy |
retro_itri_1763 ,
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