RetrogeneDB ID: | retro_ogar_3368 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873805.1:659845..660382(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOGAG00000009011 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.77 % |
Parental protein coverage: | 71.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN |
.T.SV....S.....K..DLIS.FGTDDQ.EICKQILTKGEVQVS.KERHTQLEQMFR..A.IVA.KCVN | |
Retrocopy | KTRSVVDGRSGVSGCKEKDLISSFGTDDQNEICKQILTKGEVQVSGKERHTQLEQMFRNTANIVANKCVN |
Parental | PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKENMKIERAHMRLRFILPVNEGKKLKEKLK |
PETK.PYTVILI.RAM.DI.YSVKPNKSTKQ.AL.V.KQ.KE.MKIE.AHMRL.....VNEGKKLKEKLK | |
Retrocopy | PETKQPYTVILI*RAMADIYYSVKPNKSTKQ*ALAVTKQVKEKMKIECAHMRLPSMHLVNEGKKLKEKLK |
Parental | PLIKVIESEDYSQQLEIVCLIDPGCFREIDELIKKETKG |
PLIKVIESEDYSQQLEIVC.IDPGCFREI..LIKKETKG | |
Retrocopy | PLIKVIESEDYSQQLEIVCRIDPGCFREIEALIKKETKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003795 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004283 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016904 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000008763 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000006644 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025337 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009011 | 1 retrocopy |
retro_ogar_3368 ,
|
Ochotona princeps | ENSOPRG00000008721 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000000888 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022203 | 1 retrocopy |