RetrogeneDB ID: | retro_dord_756 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_77506:4411..4775(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000015501 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DLKRFLYKKLPSVEGLHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTF-ALATDQGSKLGLSKNKSII |
DLK.FLYKKLPSVEG.HAIVVS.RDGVP.IKVAN..AP.HALRP.FLSTF.ALATDQG..LGLSKNKSII | |
Retrocopy | DLK*FLYKKLPSVEGAHAIVVSHRDGVPAIKVANNIAPKHALRPAFLSTF>ALATDQGRQLGLSKNKSII |
Parental | CYYNTYQVVQFNRLPLVVSFIASSNANTGLIVSLEKELAPLFEELIKVVEVS |
CYYNTYQVVQFNRLPLVVSFI..S.ANTGLIVSLEKELA.LFE.LIKVV.VS | |
Retrocopy | CYYNTYQVVQFNRLPLVVSFITRSHANTGLIVSLEKELALLFEVLIKVVGVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000995 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013153 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000015196 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000013304 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000025421 | 14 retrocopies | |
Dipodomys ordii | ENSDORG00000015501 | 5 retrocopies | |
Equus caballus | ENSECAG00000013569 | 1 retrocopy | |
Homo sapiens | ENSG00000109270 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000001132 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000015740 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006786 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000006830 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020688 | 3 retrocopies | |
Mus musculus | ENSMUSG00000091512 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013684 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000014955 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016310 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017674 | 1 retrocopy |