RetrogeneDB ID: | retro_cpor_208 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_10:39917443..39917699(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000013304 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.81 % |
Parental protein coverage: | 69.35 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | PVIKVAND-NAPEH-ALRPGFLSTFALATDQG-SKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASST |
P...VA....APE..A.RPGF.....L...Q..SK..L.K.KSI.C..NT.QVV......LVVSF..SS. | |
Retrocopy | PIGTVASE<DAPEW<A*RPGFCQS*LLLLQQADSKAALLKSKSIFCDFNT*QVVSV-MVKLVVSFTGSSN |
Parental | ANTGLIVSLEKELAPLFEE |
AN.GLIVSLE.EL..LFE. | |
Retrocopy | ANAGLIVSLEPELSLLFED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 10 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .98 RPM |
SRP017611_liver | 0 .04 RPM | 12 .75 RPM |
SRP040447_lung | 0 .18 RPM | 17 .07 RPM |
SRP040447_skeletal_muscle | 0 .05 RPM | 12 .05 RPM |