RetrogeneDB ID: | retro_hsap_1190 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 13:37496749..37497043(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000228825 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAMTOR3 | ||
Ensembl ID: | ENSG00000109270 | ||
Aliases: | LAMTOR3, MAP2K1IP1, MAPBP, MAPKSP1, MP1, PRO0633, Ragulator3 | ||
Description: | late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:HGNC Symbol;Acc:15606] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 79.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASS |
R.GVPVIKVA.DNAPEHALRPGFL.TFALATD.GSKLGLSKNKSIICY..TY.V.Q.N.LPLVVSFIASS | |
Retrocopy | RVGVPVIKVAIDNAPEHALRPGFLPTFALATDHGSKLGLSKNKSIICYCYTYLVIQLNHLPLVVSFIASS |
Parental | SANTGLIVSLEKELAPLFEELRQVVEVS |
.ANT.LIVSLEK.L.PLFEELRQVVEVS | |
Retrocopy | NANTELIVSLEKKLTPLFEELRQVVEVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 17 .89 RPM |
bodymap2_adrenal | 0 .00 RPM | 31 .48 RPM |
bodymap2_brain | 0 .00 RPM | 53 .16 RPM |
bodymap2_breast | 0 .00 RPM | 30 .72 RPM |
bodymap2_colon | 0 .00 RPM | 46 .73 RPM |
bodymap2_heart | 0 .00 RPM | 28 .43 RPM |
bodymap2_kidney | 0 .00 RPM | 61 .40 RPM |
bodymap2_liver | 0 .00 RPM | 15 .82 RPM |
bodymap2_lung | 0 .00 RPM | 29 .43 RPM |
bodymap2_lymph_node | 0 .00 RPM | 36 .27 RPM |
bodymap2_ovary | 0 .00 RPM | 62 .98 RPM |
bodymap2_prostate | 0 .00 RPM | 59 .08 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 14 .39 RPM |
bodymap2_testis | 0 .00 RPM | 54 .52 RPM |
bodymap2_thyroid | 0 .08 RPM | 69 .90 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 55 .01 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_32808 | 1146 libraries | 593 libraries | 85 libraries | 5 libraries | 0 libraries |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_928 |
Pongo abelii | retro_pabe_991 |
Callithrix jacchus | retro_cjac_2581 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |