RetrogeneDB ID: | retro_pabe_2772 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:120335297..120335554(-) | ||
Located in intron of: | ENSPPYG00000015708 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAMTOR3 | ||
Ensembl ID: | ENSPPYG00000014955 | ||
Aliases: | None | ||
Description: | ragulator complex protein LAMTOR3 [Source:RefSeq peptide;Acc:NP_001127674] |
Percent Identity: | 80.46 % |
Parental protein coverage: | 69.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NDNAPEHALRPGFLSTFALA-TDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSANTGLIVS |
NDNAPEH.LR..FLSTFALA.TD...KLGLSKN.SIICYYNTYQVVQFN.LPLVVSFIASS.AN.GL.V. | |
Retrocopy | NDNAPEHTLRSSFLSTFALA<TDERRKLGLSKNISIICYYNTYQVVQFNHLPLVVSFIASSNANIGLTVN |
Parental | LEKELAPLFEELRQVVE |
.EK.LAPLFE.LRQ.VE | |
Retrocopy | PEKGLAPLFEQLRQIVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .28 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .85 RPM |
SRP007412_heart | 0 .03 RPM | 5 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .49 RPM |
SRP007412_liver | 0 .00 RPM | 5 .29 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3374 |
Pan troglodytes | retro_ptro_2294 |
Gorilla gorilla | retro_ggor_2283 |
Macaca mulatta | retro_mmul_2104 |
Callithrix jacchus | retro_cjac_1821 |