RetrogeneDB ID: | retro_ecab_1061 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:41972115..41973614(+) | ||
Located in intron of: | ENSECAG00000006020 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000017673 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.28 % |
Parental protein coverage: | 99.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | PPRAC-RLPNQQPEVFYNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAAGDKEDVDRAVKAARAAFQL |
PPR.C...P.QQPEVFYNQIFIN.EWHDA.SKKTFPTVNPSTGEVIC.VA.GDKEDVDRAVKAARA.FQL | |
Retrocopy | PPRPC<LAPSQQPEVFYNQIFINKEWHDAISKKTFPTVNPSTGEVICWVATGDKEDVDRAVKAARATFQL |
Parental | GSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGK |
G.PW..MDAS.RGRLLN.LADLIE.D.TYLAALETLDNGKPYVISYLVDLDMVLKCLRYYA.WA..YHGK | |
Retrocopy | GLPWHCMDASNRGRLLNHLADLIEWDQTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYASWAE*YHGK |
Parental | TIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGP-ALATGNVVVMKVAEQTPLTALYVANLTKEA |
TI.IDGDFFSYT.HEPVGVC.QIIPWNFPL.MQAWKLGP.ALATGNVVVMKVAEQTPLTALYVANL.KEA | |
Retrocopy | TILIDGDFFSYTLHEPVGVCRQIIPWNFPLFMQAWKLGP>ALATGNVVVMKVAEQTPLTALYVANLIKEA |
Parental | GFPPGVVNVVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGRSNLKKVTLELGGKSPNI-IMSD |
GFPPGVVN.V.GFGP..GA.IASHEDVDKV.FTGSTEV.HLI.VA.GR.NLKKVTLELGGKSPNI.IMSD | |
Retrocopy | GFPPGVVNIVLGFGPMGGATIASHEDVDKVTFTGSTEVSHLI*VAVGRGNLKKVTLELGGKSPNI>IMSD |
Parental | ADMDWAVEQAHFALFFNQGQCCCAGSRTFVQEDVYAEFVERSVARARSR--VVGNPFDSQTEQGPQVDET |
ADMDW.VEQ.HFALFF.QGQCCC.GSRTFVQEDVY.EFVE.SVA.ARSR..VV.NPFDSQT.QGPQVDET | |
Retrocopy | ADMDWVVEQTHFALFFSQGQCCCGGSRTFVQEDVYTEFVEHSVAQARSRSGVVRNPFDSQTKQGPQVDET |
Parental | QFNKVLGYIKSGKEE-GAKLLCGGGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVV |
QF.KVLG.IKSGKEE.GAKLLCGGG.AAD.GYFIQPTVFGDVQDGM..AKE.IFGPVMQILK.KTIEEVV | |
Retrocopy | QFKKVLGNIKSGKEE>GAKLLCGGGTAADHGYFIQPTVFGDVQDGMIVAKEQIFGPVMQILKLKTIEEVV |
Parental | GRANNSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGNGRELGEYGLQAYTE |
GRANNSKY.LA.AVF.KDLDKA.YLSQAL.AGTVWINCYDVF.AQS.FG.YKMSGNG.ELGEYGLQAYT. | |
Retrocopy | GRANNSKYKLAVAVFMKDLDKAKYLSQAL*AGTVWINCYDVFRAQSLFGSYKMSGNGQELGEYGLQAYTK |
Parental | VKTVTIKVPQKNS |
V.TVTI.VPQKNS | |
Retrocopy | VRTVTIRVPQKNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .24 RPM | 300 .46 RPM |
SRP021940_cerebellum | 0 .26 RPM | 217 .39 RPM |
SRP021940_embryo | 1 .51 RPM | 125 .79 RPM |
SRP021940_placental_villous | 0 .72 RPM | 129 .52 RPM |
SRP021940_synovial_membrane | 1 .18 RPM | 191 .67 RPM |
SRP021940_testis | 1 .79 RPM | 302 .77 RPM |