RetrogeneDB ID: retro_mluc_1918

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429947:2291635..2293075(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000014921
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017084
• Aliases: None
• Description: None

Sequence

>retro_mluc_1918
CTATTCATCAACAACGAGTGGCAAGATGCAGTCAGCAAGAAGACCTTCCCAACAGTCAACCCCTCCACGGGAGAGGTCAT
CGGCCATGTGGCCGAAGGGGACCGAGCCGATGTGGATCGGGCAGTGAAAGCAGCTCGCGAGGCCTTCCGCCTCGGGTCTC
CATGGCGCCGGATGGATGCCTCTGAGCGGGGCCGGCTGCTGAACCGCCTGGCTGACCTAGTGGAGCGGGATCGTGTCTAC
TTGGCCTCACTGGAGACCTTGGACAACGGGAAGCCTTTCCAGGAGTCTTATGTCTTGGACCTGGATGAGGTCATCAAGGT
GTACCGGTACTTTGCCGGCTGGGCTGACAAGTGGCACGGCAAGACCATCCCCATGGACGGTGAGCATTTCTGCTTCACCC
GGCATGAGCCCGTGGGTGTCTGTGGCCAGATAATCCCGTGGAACTTCCCCTTGGTCATGCAGGGCTGGAAACTCGCCCCG
GCACTCGCCACCGGCAACACCGTGGTCATGAAGGTTGCAGAGCAGACCCCCCTTTCTGCCCTGTACTTGGCCTCCCTCAT
CAAGGAGGCAGGCTTCCCCCCGGGGGTGGTGAACATCATCACAGGCTATGGCCCAACAGCAGGAGCGGCCGTGGCCCAGC
ACATGGATATTGACAAAGTTGCTTTTACTGGCTCGACCGAGGTGGGCCACCTGATCCAGAAGGCAGCTGGAGATTCCAAC
CTCAAGAGAGTCACCTTAGAGCTGGGCGGGAAGAGCCCCAGCATCGTGTTGGCGGACGCTGACCTGGGCCACGCCGTGGA
GCAGTGCCACGAAGCCCTCTTCTTCAACATGGGCCAGTGCCGCTGTGCAGGGTCCCGGACCTTCGTCGAAGAATCCATCT
ATGAATGAGTTTTCTCGAGAGAAACAGTGGAGAAAGCGAAGCAGAGGAAAGTTGGGAACCCCTTTTGAGCTGGACACCCA
GCAGGGCCCCAGGTGACAAGGAGCAGTTTGAGCGAATCCTGGGGCTACATCCGGGTTGGCCAGAAGGAGGGGGCAAAACT
TCTCTGCGGTGGGGAGCGTTTTGGGGAGCGGGGTTTCTTCATCAAGCCCACAGTCTTTGGTGGTGTGCAAGATGACATGA
GGATTGCCAAGGAGGAGATCTTTGGGCCTGTGCAGCCCCTGTTCAAGTTCAAGAAAATTGAGGAGGTGATTGAGAGGGCC
AACAACACCAGGTACGGCTTGGCTGCCGCTGTGTTCACACGGGACCTGGACAAGGCCATGTACTTCACACAGGCACTCCA
AGCGGGGACGGTGTGGGTAAACACCTACAACATTGTCACGTGCCACACGCCGTTTGGAGGCTTTAAGGAGTCCGGTAATG
GGAGGGAGCTCGGGGAGGACGGGCTTAAGGCCTACACAGAGGTGAAGACAGTCACCATCAAGGTTCCACAGAAGAATTCG

Alignment

ORF - retro_mluc_1918 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.69 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  IFINNEWHDAVSKKTFPTINPSTGEVICQVAEGDKEDVDRAVKAARAAFQLGSPWRRMDASNRGRLLNRL
          .FINNEW.DAVSKKTFPT.NPSTGEVI..VAEGD..DVDRAVKAAR.AF.LGSPWRRMDAS.RGRLLNRL
Retrocopy LFINNEWQDAVSKKTFPTVNPSTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRL

Parental  ADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGV
          ADL.ERDR.YLA.LETLDNGKP...SY..DLD.V.K..RY.AGWADK.HGKTIP.DG..F..TRHEPVGV
Retrocopy ADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGV

Parental  CGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIIPGFGPTAGAA
          CGQIIPWNFPL.MQ.WKL.PALATGN.VVMKVAEQTPL.ALY.A.LIKEAGFPPGVVNII.G.GPTAGAA
Retrocopy CGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAA

Parental  IASHKDVDKVAFTGSTEVGRLIQVAAGNSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQC
          .A.H.D.DKVAFTGSTEVG.LIQ.AAG.SNLKRVTLELGGKSP.I...DAD...AVEQ.H.ALFFN.GQC
Retrocopy VAQHMDIDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADLGHAVEQCHEALFFNMGQC

Parental  CCAGSRTFVQEDVYA-EFVERSVARAKSRVVGDPFDSQTEQGPQV-DETQFKKIL-GYINSGKKEGAKLL
          .CAGSRTFV.E..Y...F....V..AK.R.VG.PF......GPQV.D..QF..IL.GYI..G.KEGAKLL
Retrocopy RCAGSRTFVEESIYE*VFSRETVEKAKQRKVGNPF*AGHPAGPQV<DKEQFERIL>GYIRVGQKEGAKLL

Parental  CGGGAAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSMYGLAAAVFTKDLDK
          CGG.....RG.FI.PTVFG.VQD.M.IAKEEIFGPV....KFK.IEEV..RANN..YGLAAAVFT.DLDK
Retrocopy CGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKKIEEVIERANNTRYGLAAAVFTRDLDK

Parental  ANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGNGRELGEYGLKAYTEVKTVTVKVPQKNS
          A.Y..QALQAGTVW.N.Y.......PFGG.K.SGNGRELGE.GLKAYTEVKTVT.KVPQKNS
Retrocopy AMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVPQKNS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1918 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 21 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013664	1 retrocopy	retro_amel_51,
Bos taurus	ENSBTAG00000008743	1 retrocopy	retro_btau_48,
Canis familiaris	ENSCAFG00000008683	1 retrocopy	retro_cfam_1493,
Equus caballus	ENSECAG00000017673	2 retrocopies	retro_ecab_1054, retro_ecab_1061,
Felis catus	ENSFCAG00000022000	1 retrocopy	retro_fcat_1590,
Homo sapiens	ENSG00000111275	1 retrocopy	retro_hsap_19,
Gorilla gorilla	ENSGGOG00000007108	1 retrocopy	retro_ggor_33,
Latimeria chalumnae	ENSLACG00000011798	1 retrocopy	retro_lcha_108,
Microcebus murinus	ENSMICG00000003487	1 retrocopy	retro_mmur_19,
Myotis lucifugus	ENSMLUG00000017084	1 retrocopy	retro_mluc_1918 ,
Macaca mulatta	ENSMMUG00000008336	1 retrocopy	retro_mmul_247,
Mustela putorius furo	ENSMPUG00000002282	1 retrocopy	retro_mputfur_27,
Mus musculus	ENSMUSG00000029455	1 retrocopy	retro_mmus_222,
Nomascus leucogenys	ENSNLEG00000000016	1 retrocopy	retro_nleu_22,
Otolemur garnettii	ENSOGAG00000033093	1 retrocopy	retro_ogar_203,
Pongo abelii	ENSPPYG00000004966	1 retrocopy	retro_pabe_32,
Pteropus vampyrus	ENSPVAG00000013189	1 retrocopy	retro_pvam_163,
Rattus norvegicus	ENSRNOG00000001344	1 retrocopy	retro_rnor_307,
Sus scrofa	ENSSSCG00000009889	1 retrocopy	retro_sscr_9,
Ictidomys tridecemlineatus	ENSSTOG00000015009	1 retrocopy	retro_itri_33,
Xenopus tropicalis	ENSXETG00000020930	1 retrocopy	retro_xtro_12,