RetrogeneDB ID:

retro_mputfur_27

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896918.1:3826126..3827680(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMPUG00000018536
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Aldh2
Ensembl ID:ENSMPUG00000002282
Aliases:None
Description:aldehyde dehydrogenase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:99600]


Retrocopy-Parental alignment summary:






>retro_mputfur_27
ATGCTGCGCCCCCTGGTGCCCCGGCTGCTTTGCCTCCGTGTCCGAACCGCCCCATACTCTTCCGCGGCCGCCCTTCCAAG
TCCCATCCCAAACCCAGACATCCGCTACAACCAGCTGTTCATCAACAATGAGTGGCAAGATGCCGCCAGCAAGAAGACCT
TCCCGACAGTCAACCCCGCCACGGGAGAGGTCATTGGCCACGTGGCCGAAGGGGATCGGGCTGACGTGGATCGGGCAGTG
AAAGCAGCCCGCGAGGCTTTCCGCCTGGGGTCTCCATGGCGCCGGATGGATGCCTCCGAGCGCGGCCGGCTGCTGAACCG
CCTGGCGGACCTAGTGGAGCGGGATCGTGTCTACCTGGCTTCACTGGAGACGTTGGACAATGGGAAGCCTTTCCAGGAGT
CCTATGCCTTGGACCTGGATGAGGTCATCAAAGTATACCGGTACTTTGCTGGCTGGGCTGACAAGTGGCACGGCAAGACC
ATCCCCATGGATGGAGAGCATTTCTGCTTCACCCGCCACGAGCCTGTCGGCGTCTGTGGCCAGATCATCCCATGGAACTT
CCCCTTGGTCATGCAGGGCTGGAAACTCGCCCCGGCACTGGCCACCGGCAACACAGTGGTCATGAAGGTGGCAGAGCAGA
CCCCCCTTTCTGCCCTGTACTTGGCCTCCCTCATCAAAGAGGCGGGCTTTCCCCCTGGGGTGGTGAACATTGTCACCGGC
TACGGCCCCACGGCAGGTGCCGCCATCGCCCAGCACATGGATGTCGACAAGGTGGCCTTCACCGGCTCTACTGAGGTGGG
CCACCTGATCCAGAAGGCGGCTGGCGATTCCAACCTGAAGAGAGTCACCCTGGAGCTGGGTGGGAAGAGCCCCAGCATCG
TGTTGGCCGACGCGGACATGGACCACGCCGTGGAGCAGTGCCACGAAGCCCTGTTCTTCAACATGGGCCAGTGCTGCTGT
GCGGGCTCCCGGACCTTCGTTGAAGAATCCATCTATGACGAATTTCTTGAGAGAACGGTGGAGAAGGCTAAGCAGAGAAG
AGTCGGGAATCCCTTTGAGCTGGACACCCAGCAGGGGCCCCAGGTGGACAAAGAGCAGTTTGAACGAATCCTGAGCTACA
TCCGTCTTGGCCAGAAGGAGGGGGCACAACTTCTCTGCGGCGGGGAACGTTTTGGGGAGCGCGGTTTCTTCATCAAGCCC
ACGGTCTTTGGCGGCGTGCAGGATGATATGAGGATCGCCAGAGAGGAGATCTTTGGGCCTGTGCAGCCCTTATTTAAATT
CAGGAAGATGGAGGAGGTGATCGAGAGGGCCAACAACACCAGGTATGGCTTGGCTGCCGCCGTGTTCACCCGGGATCTGG
ACAAGGCCATGTACTTCACACAGGCGCTCCAGGCCGGCACGGTGTGGGTAAACACCTACAACATTGTTACCTGCCACACG
CCCTTTGGAGGGTTTAAGGAATCTGGCAATGGGAGGGAGCTGGGGGAGGATGGGCTTAAGGCCTACACGGAGGTGAAGAC
AGTTACCATCAAGATTCCTCAAAAGAACTCGTAA

ORF - retro_mputfur_27 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.32 %
Parental protein coverage: 93.88 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalAATEVVPAPNQQPEVFYNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGDKEDVDRAVKAARAAFQL
......P.P...P...YNQ.FINNEW.DA.SKKTFPTVNP.TGEVI..VAEGD..DVDRAVKAAR.AF.L
RetrocopySSAAALPSPIPNPDIRYNQLFINNEWQDAASKKTFPTVNPATGEVIGHVAEGDRADVDRAVKAAREAFRL
ParentalGSPWRRMNASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCIRYYAGWADKYHGK
GSPWRRM.AS.RGRLLNRLADL.ERDR.YLA.LETLDNGKP...SY..DLD.V.K..RY.AGWADK.HGK
RetrocopyGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGK
ParentalTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAG
TIP.DG..F..TRHEPVGVCGQIIPWNFPL.MQ.WKL.PALATGN.VVMKVAEQTPL.ALY.A.LIKEAG
RetrocopyTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAG
ParentalFPPGVVNIIPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQVAAGSSNLKRVTLELGGKSPNIIMSDAD
FPPGVVNI..G.GPTAGAAIA.H.DVDKVAFTGSTEVGHLIQ.AAG.SNLKRVTLELGGKSP.I...DAD
RetrocopyFPPGVVNIVTGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADAD
ParentalMNWAVEQAHFALFFNQGQCCCAGSRTFVQEDVYAEFVERSVARAKSRVVGNPFDSQTEQGPQVDETQFKK
M..AVEQ.H.ALFFN.GQCCCAGSRTFV.E..Y.EF.ER.V..AK.R.VGNPF...T.QGPQVD..QF..
RetrocopyMDHAVEQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKQRRVGNPFELDTQQGPQVDKEQFER
ParentalVLGYIKSGKEEGAKLLCGGGAAADRGYFIQPTVFGDVQDSMTIAREEIFGPVMQILKFKTIEEVIGRANN
.L.YI..G..EGA.LLCGG.....RG.FI.PTVFG.VQD.M.IAREEIFGPV....KF...EEVI.RANN
RetrocopyILSYIRLGQKEGAQLLCGGERFGERGFFIKPTVFGGVQDDMRIAREEIFGPVQPLFKFRKMEEVIERANN
ParentalSKYGLAAAVFTKDLDKANYLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVS
..YGLAAAVFT.DLDKA.Y..QALQAGTVWVN.Y.......PFGG.K.SG.GRELGE.GL.AYTEVKTV.
RetrocopyTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVT
ParentalM
.
RetrocopyI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_27 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_27 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 21 parental genes, and 22 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000136641 retrocopy
retro_amel_51,
Bos taurus ENSBTAG000000087431 retrocopy
retro_btau_48,
Canis familiaris ENSCAFG000000086831 retrocopy
retro_cfam_1493,
Equus caballus ENSECAG000000176732 retrocopies
retro_ecab_1054, retro_ecab_1061,
Felis catus ENSFCAG000000220001 retrocopy
retro_fcat_1590,
Homo sapiens ENSG000001112751 retrocopy
retro_hsap_19,
Gorilla gorilla ENSGGOG000000071081 retrocopy
retro_ggor_33,
Latimeria chalumnae ENSLACG000000117981 retrocopy
retro_lcha_108,
Microcebus murinus ENSMICG000000034871 retrocopy
retro_mmur_19,
Myotis lucifugus ENSMLUG000000170841 retrocopy
retro_mluc_1918,
Macaca mulatta ENSMMUG000000083361 retrocopy
retro_mmul_247,
Mustela putorius furoENSMPUG00000002282 1 retrocopy
retro_mputfur_27 ,
Mus musculus ENSMUSG000000294551 retrocopy
retro_mmus_222,
Nomascus leucogenys ENSNLEG000000000161 retrocopy
retro_nleu_22,
Otolemur garnettii ENSOGAG000000330931 retrocopy
retro_ogar_203,
Pongo abelii ENSPPYG000000049661 retrocopy
retro_pabe_32,
Pteropus vampyrus ENSPVAG000000131891 retrocopy
retro_pvam_163,
Rattus norvegicus ENSRNOG000000013441 retrocopy
retro_rnor_307,
Sus scrofa ENSSSCG000000098891 retrocopy
retro_sscr_9,
Ictidomys tridecemlineatus ENSSTOG000000150091 retrocopy
retro_itri_33,
Xenopus tropicalis ENSXETG000000209301 retrocopy
retro_xtro_12,


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