RetrogeneDB ID: | retro_mmus_222 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:45802463..45804023(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000035561 | |
Aliases: | Aldh1b1, 2700007F14Rik | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Aldh2 | ||
Ensembl ID: | ENSMUSG00000029455 | ||
Aliases: | None | ||
Description: | aldehyde dehydrogenase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:99600] |
Percent Identity: | 72.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLRAALTTVRRGPRLSRLLSAAATSAVPAPNHQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQV |
ML.A.L...R......R..S.....A.P.P...PE...N..FINNEWHDAVS.KTFPTVNP.TGEVI..V | |
Retrocopy | MLTARLLLPRLLCLQGRTTSYSTAAALPNPIPNPEICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHV |
Parental | AEGNKEDVDKAVKAARAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVD |
AEG...DVD.AVKAAR.AF.LGSPWRRMDAS.RGRLL.RLADL.ERDR.YLA.LETLDNGKP...SY..D | |
Retrocopy | AEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLD |
Parental | LDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVM |
LD.V.K..RY.AGWADK.HGKTIP.DG..F..TRHEPVGVCGQIIPWNFPL.MQ.WKL.PALATGN.VVM | |
Retrocopy | LDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVM |
Parental | KVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEGVDKVAFTGSTEVGHLIQVAAGSSN |
KVAEQTPL.ALY.A.LIKEAGFPPGVVNI..G.GPTAGAAIA.H..VDKVAFTGSTEVGHLIQ.AAG.SN | |
Retrocopy | KVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGESN |
Parental | LKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQCCCAGSRTFVQENVYDEFVERSVARAKSRVV |
LKRVTLELGGKSP.I...DADM..AV.Q.H.ALFFN.GQCCCAGSRTFV.E..Y.EF.ER.V..AK.R.V | |
Retrocopy | LKRVTLELGGKSPSIVLADADMEHAVDQCHEALFFNMGQCCCAGSRTFVEESIYREFLERTVEKAKQRKV |
Parental | GNPFDSRTEQGPQVDETQFKKILGYIKSGQQEGAKLLCGGGAAADRGYFIQPTVFGDVKDGMTIAKEEIF |
GNPF...T.QGPQVD..QF..ILGYI..GQ.EGAKLLCGG.....RG.FI.PTVFGDV.DGM.IAKEEIF | |
Retrocopy | GNPFELDTQQGPQVDKEQFERILGYIRLGQKEGAKLLCGGERLGERGFFIKPTVFGDVQDGMRIAKEEIF |
Parental | GPVMQILKFKTIEEVVGRANDSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMS |
GPV....KFK.IEEV..RAN...YGLAAAVFT.DLDKA.Y..QALQAGTVW.N.Y.......PFGG.K.S | |
Retrocopy | GPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKAIYFTQALQAGTVWVNTYNIVTCHTPFGGFKES |
Parental | GSGRELGEYGLQAYTEVKTVTVKVPQKNS |
G.GRELGE.GL.AYTEVKTVT.KVP.KNS | |
Retrocopy | GNGRELGEDGLRAYTEVKTVTIKVPEKNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 4 .37 RPM | 58 .80 RPM |
SRP007412_cerebellum | 0 .83 RPM | 66 .70 RPM |
SRP007412_heart | 13 .70 RPM | 256 .64 RPM |
SRP007412_kidney | 5 .18 RPM | 495 .24 RPM |
SRP007412_liver | 56 .34 RPM | 1919 .65 RPM |
SRP007412_testis | 10 .29 RPM | 81 .32 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
AA144340 | 45802983 | 45803430 | 100 | 446 | 0 | 445 |
AA469589 | 45802928 | 45803371 | 99.3 | 421 | 1 | 405 |
AA655422 | 45802477 | 45802626 | 100 | 148 | 0 | 147 |
AI526762 | 45802789 | 45803177 | 98.2 | 380 | 6 | 372 |
AI528239 | 45802789 | 45803110 | 97.8 | 306 | 5 | 294 |
AI892559 | 45802983 | 45803455 | 100 | 472 | 0 | 472 |
BG962634 | 45802613 | 45803283 | 95.6 | 598 | 4 | 577 |
BG967081 | 45802887 | 45803484 | 99.2 | 595 | 2 | 592 |
BI217017 | 45802452 | 45803163 | 99.2 | 710 | 1 | 707 |
BI222043 | 45802457 | 45803162 | 99.5 | 700 | 1 | 692 |
BI414832 | 45802457 | 45803135 | 100 | 676 | 0 | 674 |
BI901537 | 45802978 | 45803528 | 99.7 | 548 | 2 | 546 |
BM894719 | 45803010 | 45803573 | 100 | 563 | 0 | 563 |
BU523348 | 45802452 | 45803274 | 97.7 | 809 | 4 | 794 |