RetrogeneDB ID: | retro_mmul_247 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:39015750..39017304(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000013057 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ALDH2 | ||
Ensembl ID: | ENSMMUG00000008336 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.42 % |
Parental protein coverage: | 98.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QIFINNEWHNAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNR |
Q.FINNEW..AVS.KTFPTVNP.TGEVI..VAEGD..DVD.AVKAAR.AF.LGSPWRRMDAS.RG.LLNR | |
Retrocopy | QLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGQLLNR |
Parental | LADLIERDRTYLAALETLDNGKPYVTSYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVG |
LADL.ERDR.YLA.LETLDNGKP...SY..DLD.V.K..RY.AGWADK.HGKTIP.DG..F..TRHEPVG | |
Retrocopy | LADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVG |
Parental | VCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGA |
VCGQIIPWNFPL.MQ.WKL.PALATGN.VVMKVAEQTPL.ALYVA.LIKEAGFPPGVVNI..G.GPTAGA | |
Retrocopy | VCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYVASLIKEAGFPPGVVNIITGYGPTAGA |
Parental | AIASHEDVDKVAFTGSTETGRLIQVAAGSSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFALFFNQGQ |
AIA.H.DVDKVAFTGSTE.G.LIQ.AAG.SNLKRVTLELGGKSP.I...DADM..AVEQ.H.ALFFN.GQ | |
Retrocopy | AIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMEHAVEQCHEALFFNMGQ |
Parental | C----SRTFVQEDIYDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCG |
C....SRTFV.E.IY.EF.ER.V..AK.R.VGNPF...T.QGPQVD..QF...LGYI..G..EGAKLLCG | |
Retrocopy | CCCAGSRTFVEESIYNEFLERTVEKAKQRKVGNPFELDTQQGPQVDKEQFERVLGYIQLGQKEGAKLLCG |
Parental | GGIAADRGYFIQPTVFGDVQDGMTIAKEEIFGPVMQILKFKTIEEVVGRANNSTYGLAAAVFTKDLDKAN |
G.....RG.FI.PTVFG.VQD.M.IAKEEIFGPV....KFK.IEEV..RANN..YGLAAAVFT.DLDKA. | |
Retrocopy | GERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKKIEEVIERANNTRYGLAAAVFTRDLDKAM |
Parental | YLSQALQAGTVWVNCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTVSV |
Y..QALQAGTVWVN.Y.......PFGG.K.SG.GRELGE.GL.AYTEVKTV.. | |
Retrocopy | YFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 2 .69 RPM | 58 .04 RPM |
SRP007412_brain_prefrontal_cortex | 3 .49 RPM | 113 .68 RPM |
SRP007412_cerebellum | 4 .84 RPM | 52 .63 RPM |
SRP007412_heart | 12 .31 RPM | 182 .84 RPM |
SRP007412_kidney | 44 .37 RPM | 412 .32 RPM |
SRP007412_liver | 476 .75 RPM | 1404 .87 RPM |
SRP007412_testis | 3 .32 RPM | 43 .84 RPM |