RetrogeneDB ID: | retro_ecab_1085 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:80712714..80713314(+) | ||
Located in intron of: | ENSECAG00000020186 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AMMECR1L | ||
Ensembl ID: | ENSECAG00000023095 | ||
Aliases: | None | ||
Description: | AMMECR1-like [Source:HGNC Symbol;Acc:28658] |
Percent Identity: | 74.75 % |
Parental protein coverage: | 64.52 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MGKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHSHGNQSTTVPGSSSGPLQNHQHVDGSSGRENVSDLTLG |
MGKR..V.PL.PKLA..CCGVKK.KL.G.GTHSH.NQSTTVPGSSSG..QNH.HV.GSSG.ENV.DLTLG | |
Retrocopy | MGKRHRVSPLKPKLAECCCGVKKLKLPGNGTHSHRNQSTTVPGSSSGHFQNHKHVGGSSGQENVLDLTLG |
Parental | PGNSP-ITRMNPASGALSPLPRPNGTANTAKNLVVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLF |
..NSP.I..MNP.SGALSPL..PNGT.N..KNLVVTAEMCCYCFD..YCHLYGFPQ..LPRFT.DPY... | |
Retrocopy | SRNSP>IIQMNPSSGALSPLLGPNGTTNNTKNLVVTAEMCCYCFDIFYCHLYGFPQSQLPRFTSDPYLPL |
Parental | VTWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFP-PLTREELPKLFCSVSLLTN |
VTWKTG.DK...G...TFSA.NL.SGLREY.LTSALKDS..P.PLT.EELPKLFCS.SLLT. | |
Retrocopy | VTWKTG*DKKFSGYTRTFSAINLYSGLREYMLTSALKDS*SP<PLT*EELPKLFCSISLLTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 9 .62 RPM |
SRP021940_cerebellum | 0 .00 RPM | 11 .84 RPM |
SRP021940_embryo | 0 .00 RPM | 18 .92 RPM |
SRP021940_placental_villous | 0 .00 RPM | 22 .23 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 18 .59 RPM |
SRP021940_testis | 0 .00 RPM | 29 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009373 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010743 | 1 retrocopy | |
Equus caballus | ENSECAG00000023095 | 1 retrocopy |
retro_ecab_1085 ,
|
Echinops telfairi | ENSETEG00000000510 | 1 retrocopy | |
Homo sapiens | ENSG00000144233 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014448 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006871 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001987 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041915 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015793 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012437 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014762 | 1 retrocopy |