RetrogeneDB ID: | retro_mmul_1302 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 17:76976714..76977345(+) | ||
Located in intron of: | ENSMMUG00000005847 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AMMECR1L | ||
Ensembl ID: | ENSMMUG00000001987 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.46 % |
Parental protein coverage: | 68.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | GKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHSHGNQSTTVPGSSSGPLQNHQHVDSSSGRENVSDLTLGP |
GK...VPPL.PKL.AGCCG.KKPKLSGS.THSH...ST.VPG..SGPLQN.QHVDSSS..E.V.DLTLGP | |
Retrocopy | GKIYHVPPLDPKLTAGCCGSKKPKLSGSETHSHEKESTAVPGPRSGPLQNCQHVDSSSR*ESVLDLTLGP |
Parental | GNSPITRMNPASGALSPLPRPNGTA-NTTKNLVVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFV |
G.SPIT.MNPASG.LSPLP..NGTA...TKNL.VTA.MCCYCF..LYC.LYGFPQP.LPRFTNDP.PLFV | |
Retrocopy | GSSPIT*MNPASGTLSPLPQSNGTA<SSTKNLEVTAQMCCYCFTELYCQLYGFPQPQLPRFTNDPCPLFV |
Parental | TWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFP-PLTREELPKLFCSVSLLTNFEDASDYLD |
TWKTG.DK.L.GCIGTFSAMNL.SGLREY.L..A.KDS.FP.P...EELPKLFCSVSL.TNFEDASDYLD | |
Retrocopy | TWKTGSDKWLHGCIGTFSAMNLYSGLREYMLAIAFKDS*FP<PPV*EELPKLFCSVSLHTNFEDASDYLD |
Parental | WEV |
WE. | |
Retrocopy | WEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 9 .97 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 15 .07 RPM |
SRP007412_cerebellum | 0 .00 RPM | 14 .53 RPM |
SRP007412_heart | 0 .06 RPM | 8 .01 RPM |
SRP007412_kidney | 0 .00 RPM | 19 .37 RPM |
SRP007412_liver | 0 .00 RPM | 9 .70 RPM |
SRP007412_testis | 0 .00 RPM | 38 .90 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1227 |
Pan troglodytes | retro_ptro_843 |
Gorilla gorilla | retro_ggor_961 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009373 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010743 | 1 retrocopy | |
Equus caballus | ENSECAG00000023095 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000510 | 1 retrocopy | |
Homo sapiens | ENSG00000144233 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014448 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006871 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001987 | 1 retrocopy |
retro_mmul_1302 ,
|
Mus musculus | ENSMUSG00000041915 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015793 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012437 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014762 | 1 retrocopy |