RetrogeneDB ID: | retro_mluc_684 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429771:18852602..18853597(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AMMECR1L | ||
Ensembl ID: | ENSMLUG00000006871 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.39 % |
Parental protein coverage: | 90.96 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | FPLHFEFIRWLVCIPYAGHQIRMGKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHTHGNQSTTVPGSSSGP |
FP....F......IP...H..RMGKR.C.PPLEPKLAAGCCGVKKPKLSGSG.H.H.NQSTTVPGSSSGP | |
Retrocopy | FPGNTNFLLQVL*IPDHEH*VRMGKRLCIPPLEPKLAAGCCGVKKPKLSGSGMHSHRNQSTTVPGSSSGP |
Parental | LQNHQHADGSSGRENVSDLTLGPGNSPITRMNPASGALSPLPRPNGTANTTKNLVVTAEMCCYCFDVLYC |
LQNHQH.DGSSGRENVSDLTLGPGNS.I..MNP.SGALSPLPRPNGTANTTKNLVVTAEMCCYCF.VLYC | |
Retrocopy | LQNHQHVDGSSGRENVSDLTLGPGNSSIIQMNPVSGALSPLPRPNGTANTTKNLVVTAEMCCYCFGVLYC |
Parental | HLYGFPQPRLPRFTNDPYPLFVTWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFP-PLTREE |
HLYGFPQP.LPRFTN.PYPLFVTWKTG.DK.LRGCIGTFSAMNLH..LREYTLTSALKDSRFP.PLTREE | |
Retrocopy | HLYGFPQP*LPRFTNGPYPLFVTWKTGQDKWLRGCIGTFSAMNLHPRLREYTLTSALKDSRFP<PLTREE |
Parental | LPKLSCSVSLLTNFEDASDYLDWEVGVHGIRIEFINEKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGG |
LPK.SCSVSLLTNFEDASDY.DWEVGVHGI.IEFINEKGVK.TATYLPEVAKEQDWDQIQTIDSLL.KGG | |
Retrocopy | LPKFSCSVSLLTNFEDASDYQDWEVGVHGIQIEFINEKGVKCTATYLPEVAKEQDWDQIQTIDSLLKKGG |
Parental | FKAPITSEFRKTIRLTRYRSEKVTISYAEYIASRQHCFQNGTLHAPPLYNHYS |
FKAPITSEFRK.I.LTRYRSEKVTISYAEYIAS.QHCFQNGTLHA.PLYNHYS | |
Retrocopy | FKAPITSEFRKMIILTRYRSEKVTISYAEYIASQQHCFQNGTLHALPLYNHYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009373 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010743 | 1 retrocopy | |
Equus caballus | ENSECAG00000023095 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000510 | 1 retrocopy | |
Homo sapiens | ENSG00000144233 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014448 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006871 | 1 retrocopy |
retro_mluc_684 ,
|
Macaca mulatta | ENSMMUG00000001987 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041915 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015793 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012437 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014762 | 1 retrocopy |