RetrogeneDB ID: | retro_shar_86 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL857016.1:324059..324977(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSHAG00000007519 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000014762 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.53 % |
Parental protein coverage: | 93.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHSHGNQSTTVPGSSSGPLQNHQHVDGSNGRENVSDLTLG |
M.KRRCVPPLEPKLAAGCCGVK.PKLSGSGTHSHGNQSTTVPGSSSGPLQ.HQHVDGSNGRENVS.LTLG | |
Retrocopy | MDKRRCVPPLEPKLAAGCCGVKTPKLSGSGTHSHGNQSTTVPGSSSGPLQSHQHVDGSNGRENVSHLTLG |
Parental | PGNSPITRMNPTSGALSPLSRPNGTANTTKNLVVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFV |
PGNSPITRMNPT.GALSPLS.P.GTANTTKNLVVTAEMCCYCFDVLYCHLYGF.QPRLPRFTNDPYPLFV | |
Retrocopy | PGNSPITRMNPTWGALSPLSQPSGTANTTKNLVVTAEMCCYCFDVLYCHLYGFSQPRLPRFTNDPYPLFV |
Parental | TWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDW |
TWK.GRDK.LRGCIGTFSAMNLHSGLREY.LTSAL.DSRFPPLTREELPKLFCSVSLLTNFEDASDYLDW | |
Retrocopy | TWKMGRDKQLRGCIGTFSAMNLHSGLREYALTSALMDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDW |
Parental | EVGVHGIRIEFINEKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITNEFRKTIKLTRYRSEKV |
EVGVHGIRIEFI.EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITNEFRKTIKLTRYRSEKV | |
Retrocopy | EVGVHGIRIEFIDEKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITNEFRKTIKLTRYRSEKV |
Parental | TISYAEYIASR |
TISYAEYIASR | |
Retrocopy | TISYAEYIASR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009373 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010743 | 1 retrocopy | |
Equus caballus | ENSECAG00000023095 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000510 | 1 retrocopy | |
Homo sapiens | ENSG00000144233 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014448 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006871 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001987 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041915 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015793 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012437 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014762 | 1 retrocopy |
retro_shar_86 ,
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