RetrogeneDB ID:

retro_shar_86

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL857016.1:324059..324977(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSSHAG00000007519
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSSHAG00000014762
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_shar_86
ATGGATAAAAGACGCTGTGTTCCTCCACTAGAGCCCAAGTTGGCAGCAGGCTGTTGCGGGGTAAAGACGCCTAAATTATC
AGGAAGTGGAACACACAGTCACGGGAACCAGTCAACAACTGTACCTGGCTCTAGTTCAGGTCCTCTTCAGAGCCACCAGC
ATGTGGATGGGAGCAATGGAAGGGAGAATGTGTCTCACTTAACTCTGGGGCCTGGAAATTCCCCAATTACTCGAATGAAT
CCCACTTGGGGAGCTCTGAGCCCACTTTCCCAGCCCAGTGGAACTGCCAATACCACCAAGAATCTGGTGGTGACAGCGGA
AATGTGCTGCTACTGCTTCGATGTCCTCTATTGCCATCTCTATGGCTTCTCCCAGCCACGACTTCCTAGATTCACCAATG
ACCCCTACCCACTCTTTGTGACATGGAAGATGGGGAGAGACAAACAGCTTCGTGGCTGCATTGGAACCTTCTCGGCCATG
AATCTTCATTCAGGACTCAGGGAATACGCATTAACCAGTGCACTTATGGACAGCAGATTTCCCCCCCTGACCCGCGAGGA
GCTGCCTAAACTTTTCTGCTCTGTCTCCCTTCTTACTAACTTTGAGGATGCCAGTGACTACCTTGACTGGGAGGTAGGGG
TACATGGGATTCGAATTGAGTTCATCGACGAAAAAGGTGTTAAAAGGACAGCCACATATTTACCTGAGGTCGCTAAGGAA
CAAGATTGGGATCAGATCCAGACAATAGACTCCTTGCTCAGGAAAGGCGGCTTTAAGGCTCCAATTACCAATGAATTTAG
AAAAACAATTAAACTCACCAGATACCGCAGCGAGAAAGTGACAATCAGTTATGCAGAGTATATTGCTTCTCGTCATGGCA
CTCTTCATGCCCCACCGCTCTACAATCATTACTCCTGA

ORF - retro_shar_86 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.53 %
Parental protein coverage: 93.27 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGKRRCVPPLEPKLAAGCCGVKKPKLSGSGTHSHGNQSTTVPGSSSGPLQNHQHVDGSNGRENVSDLTLG
M.KRRCVPPLEPKLAAGCCGVK.PKLSGSGTHSHGNQSTTVPGSSSGPLQ.HQHVDGSNGRENVS.LTLG
RetrocopyMDKRRCVPPLEPKLAAGCCGVKTPKLSGSGTHSHGNQSTTVPGSSSGPLQSHQHVDGSNGRENVSHLTLG
ParentalPGNSPITRMNPTSGALSPLSRPNGTANTTKNLVVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFV
PGNSPITRMNPT.GALSPLS.P.GTANTTKNLVVTAEMCCYCFDVLYCHLYGF.QPRLPRFTNDPYPLFV
RetrocopyPGNSPITRMNPTWGALSPLSQPSGTANTTKNLVVTAEMCCYCFDVLYCHLYGFSQPRLPRFTNDPYPLFV
ParentalTWKTGRDKRLRGCIGTFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDW
TWK.GRDK.LRGCIGTFSAMNLHSGLREY.LTSAL.DSRFPPLTREELPKLFCSVSLLTNFEDASDYLDW
RetrocopyTWKMGRDKQLRGCIGTFSAMNLHSGLREYALTSALMDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDW
ParentalEVGVHGIRIEFINEKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITNEFRKTIKLTRYRSEKV
EVGVHGIRIEFI.EKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITNEFRKTIKLTRYRSEKV
RetrocopyEVGVHGIRIEFIDEKGVKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITNEFRKTIKLTRYRSEKV
ParentalTISYAEYIASR
TISYAEYIASR
RetrocopyTISYAEYIASR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_86 was not experimentally validated.

Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000093731 retrocopy
Callithrix jacchus ENSCJAG000000107431 retrocopy
Equus caballus ENSECAG000000230951 retrocopy
Echinops telfairi ENSETEG000000005101 retrocopy
Homo sapiens ENSG000001442331 retrocopy
Gorilla gorilla ENSGGOG000000144481 retrocopy
Myotis lucifugus ENSMLUG000000068711 retrocopy
Macaca mulatta ENSMMUG000000019871 retrocopy
Mus musculus ENSMUSG000000419152 retrocopies
Nomascus leucogenys ENSNLEG000000157931 retrocopy
Pan troglodytes ENSPTRG000000124371 retrocopy
Sarcophilus harrisii ENSSHAG00000014762 1 retrocopy
retro_shar_86 ,



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