RetrogeneDB ID: | retro_ecab_459 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 19:21723649..21724128(+) | ||
Located in intron of: | ENSECAG00000008905 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF115 | ||
Ensembl ID: | ENSECAG00000009030 | ||
Aliases: | None | ||
Description: | ring finger protein 115 [Source:HGNC Symbol;Acc:18154] |
Percent Identity: | 90.12 % |
Parental protein coverage: | 59.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IIQQIFAGFFANSAIPGP-HPFTWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLP |
IIQ.IF.GFFANSAIPG..HPFTWSGMLHSNPGDYAWGQTGLDAIVTQLLGQ.ENTGPPPADKEKITSLP | |
Retrocopy | IIQRIFEGFFANSAIPGSLHPFTWSGMLHSNPGDYAWGQTGLDAIVTQLLGQVENTGPPPADKEKITSLP |
Parental | TVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQTQS |
TVTVTQEQVDMGLECPV.KEDYT.EEEV.QLPC.HFFHSSCIVPWLELHD.C.VCRKSLNGEDS.RQTQS | |
Retrocopy | TVTVTQEQVDMGLECPVYKEDYTGEEEVWQLPCKHFFHSSCIVPWLELHDACAVCRKSLNGEDSARQTQS |
Parental | SEASASNRFSSDSQ-LHDRWTF |
SEASASNRF.SDSQ..HD.WTF | |
Retrocopy | SEASASNRF-SDSQ<AHD*WTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .47 RPM | 6 .79 RPM |
SRP021940_cerebellum | 0 .52 RPM | 20 .41 RPM |
SRP021940_embryo | 0 .54 RPM | 14 .45 RPM |
SRP021940_placental_villous | 0 .34 RPM | 14 .10 RPM |
SRP021940_synovial_membrane | 0 .47 RPM | 16 .69 RPM |
SRP021940_testis | 0 .26 RPM | 10 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000009030 | 1 retrocopy |
retro_ecab_459 ,
|
Macropus eugenii | ENSMEUG00000002500 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003055 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014487 | 13 retrocopies | |
Tarsius syrichta | ENSTSYG00000004867 | 2 retrocopies |