RetrogeneDB ID: | retro_pvam_964 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_19689:6770..7443(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF115 | ||
Ensembl ID: | ENSPVAG00000014487 | ||
Aliases: | None | ||
Description: | ring finger protein 115 [Source:HGNC Symbol;Acc:18154] |
Percent Identity: | 78.7 % |
Parental protein coverage: | 74.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | HFAEFWRNLDHTMIIQDFRPFLSSNPLDQDNRASERGHQTHTD-FWGPSRPPRLPMTRRYRSQGSTRPDR |
HFAE.W.NL....IIQ.FRPFLSSNPLDQDNRA.E.GHQTHTD..WGPS...RLPMT.RYRSQGST.P.R | |
Retrocopy | HFAELWCNLNLRIIIQNFRPFLSSNPLDQDNRANEGGHQTHTD<LWGPSQSSRLPMTWRYRSQGSTHPRR |
Parental | SPAIEGIIQQFFAGFFANSAVPGSPHPL-SWSGLLHSNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADK |
SPAIE.IIQQFFA..FANS.VPGSPHP..SWS..LHSNPG.YAWG.TGLDAIVTQLL.QLENTGPP.ADK | |
Retrocopy | SPAIERIIQQFFANIFANSVVPGSPHPF<SWSKMLHSNPGKYAWGHTGLDAIVTQLLRQLENTGPPQADK |
Parental | -EKITSLPTVTVTQEQVDTGLECSVCKEDYTVGEEVR-QLPCNHFFHSSCIVPWLELHDTCPICRKSLNG |
.EK...LPT.TVTQE.VD..LECSVCKEDYTV.EEV..QLPC.H.FHSSC.VPWLELHDTC.IC.KSLN. | |
Retrocopy | >EK-SHLPTETVTQERVDMCLECSVCKEDYTVEEEVG<QLPCSHIFHSSCNVPWLELHDTCSICGKSLND |
Parental | EDSTWQTQSSEASASNRFSS |
E..TWQTQSSEASASN.FSS | |
Retrocopy | EHATWQTQSSEASASNGFSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000009030 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002500 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003055 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014487 | 13 retrocopies | |
Tarsius syrichta | ENSTSYG00000004867 | 2 retrocopies |