RetrogeneDB ID: | retro_tsyr_1734 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_562700:185..831(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF115 | ||
Ensembl ID: | ENSTSYG00000004867 | ||
Aliases: | None | ||
Description: | ring finger protein 115 [Source:HGNC Symbol;Acc:18154] |
Percent Identity: | 93.06 % |
Parental protein coverage: | 71.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LGGGSSRIDNSTSTHFAELWDH-LDHTFFQDFRPFLSSSPLDQDHRANERSHQTHTDFWGPSRPPRLPMT |
LG.GSSR..NST.THFAELWDH.LDHTFFQDFRPFLSSSPLDQD.RANERSHQTHTDFWGPSRPPRLPMT | |
Retrocopy | LGDGSSRVGNSTPTHFAELWDH>LDHTFFQDFRPFLSSSPLDQDNRANERSHQTHTDFWGPSRPPRLPMT |
Parental | RRYRSQGSSRPDRSPAIEGIIQQIFAGFFANSAIPGSPHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLG |
RRYRSQGSSRPDRSPAIEGIIQQIFAGF.ANSAIPGSPHPFSWSG.LHSNPGDYAWGQTGLDAIVTQ.LG | |
Retrocopy | RRYRSQGSSRPDRSPAIEGIIQQIFAGFSANSAIPGSPHPFSWSGLLHSNPGDYAWGQTGLDAIVTQPLG |
Parental | QLENTGPPPADKEKILSLPTVTVTQEQVDMGLECPVCKEDYTVKEEVRQLPCNHFFHSSCIVPWLELHDP |
QLENTGPPPADKEKI.SLP.VTVT.EQVDMGLECPVCKEDYTVKEEV.QLPCNHFFHSSCIVPWLELHD. | |
Retrocopy | QLENTGPPPADKEKIISLPAVTVT*EQVDMGLECPVCKEDYTVKEEVLQLPCNHFFHSSCIVPWLELHDI |
Parental | CFVCRK |
C.VCRK | |
Retrocopy | CPVCRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000009030 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002500 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003055 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014487 | 13 retrocopies | |
Tarsius syrichta | ENSTSYG00000004867 | 2 retrocopies |
retro_tsyr_1734 , retro_tsyr_1870,
|