RetrogeneDB ID: | retro_pvam_733 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_10156:37780..38491(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF115 | ||
Ensembl ID: | ENSPVAG00000014487 | ||
Aliases: | None | ||
Description: | ring finger protein 115 [Source:HGNC Symbol;Acc:18154] |
Percent Identity: | 74.69 % |
Parental protein coverage: | 77.7 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | THFAEFWRNLDHTMIIQDFRPFLSSNPLDQDNRASERGHQTHTD-FWGPSRPPRLPMTRRYRSQGSTRPD |
THFAEFW.N....MIIQDFR.FLSSN.LD..NRA.ERGHQTHTD..WGPSRP.RLPM..RYR.Q.ST.P. | |
Retrocopy | THFAEFWCNSNLSMIIQDFRQFLSSNLLD*NNRANERGHQTHTD<LWGPSRPSRLPMIGRYRLQRSTHPG |
Parental | RSPAIEGIIQQFFAGFFANSAVPGSPHPLSWSGLLHSNPGDYAWGQT-GL-DAIVTQLLGQLENTGPPPA |
RSPA...IIQQFFAG.FANSAVPGSPHP.SW...LHS.PGDYAW..T.GL.DAI...LL.QL.N.GPP.A | |
Retrocopy | RSPAMKRIIQQFFAGVFANSAVPGSPHPFSWRRMLHSSPGDYAWQFTQGL<DAIIS*LLRQLKNKGPPRA |
Parental | DKEKITSLPTVTVTQEQVDTGLECSVCKEDYTVGEEV-RQLPCNHFFHSSCIVPWLELHDTCPICRKSLN |
.KEKITSLPTVTVTQEQVD..LECSVCKE.YT..EEV.RQLPC.H.F.S.CIVP.LELHDTC.IC..S.N | |
Retrocopy | TKEKITSLPTVTVTQEQVDMCLECSVCKEEYTAEEEV<RQLPCSHIFQSRCIVPCLELHDTCSICGQS*N |
Parental | GEDSTWQTQSSEASASNRFSSDSQLHDRWTF |
GE..TWQTQSSEASA.NRFSSD.QL.D.WTF | |
Retrocopy | GEHTTWQTQSSEASAGNRFSSDRQLQDWWTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000009030 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002500 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003055 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014487 | 13 retrocopies | |
Tarsius syrichta | ENSTSYG00000004867 | 2 retrocopies |