RetrogeneDB ID: | retro_pvam_1293 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_56678:914..1480(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF115 | ||
Ensembl ID: | ENSPVAG00000014487 | ||
Aliases: | None | ||
Description: | ring finger protein 115 [Source:HGNC Symbol;Acc:18154] |
Percent Identity: | 75.77 % |
Parental protein coverage: | 62.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | RGHQTHTDFWGPSRPP-RLPMTRRYRSQGSTRPDRSPAIEGIIQQFFAGFFANSAVPGSPHPLSWSGLLH |
RGHQTH....GPS.P...LPM..RYR.Q.ST.P.RS.A.E.IIQQFFAG.FANSAVPG.PHP.SW.G.LH | |
Retrocopy | RGHQTH*-LSGPSWPS<KLPMIGRYRLQRSTHPGRSQAMERIIQQFFAGVFANSAVPGFPHPFSWRGMLH |
Parental | SNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADK-EKITSLPTVTVTQEQVDTGLECSVCKEDYTVGEEV |
S.PGDYA.G.TGLDAIVTQLL.QLENTG.P.ADK.EK...LPTVTVTQEQVD..LECSVCKEDYTV..EV | |
Retrocopy | SSPGDYACGYTGLDAIVTQLLRQLENTGRPRADK>EK-SHLPTVTVTQEQVDMCLECSVCKEDYTVEKEV |
Parental | -RQLPCNHFFHSSCIVPWLELHDTCPICRKSLNGEDSTWQTQSSEASASNRFSS |
.RQLP..H.F.SSCIVP.LELHDTC.IC..SLNGE..TWQTQSSEASASNRFSS | |
Retrocopy | <RQLP*SHIFQSSCIVPCLELHDTCSICGQSLNGEHATWQTQSSEASASNRFSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000009030 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002500 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003055 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014487 | 13 retrocopies | |
Tarsius syrichta | ENSTSYG00000004867 | 2 retrocopies |