RetrogeneDB ID: | retro_pvam_1442 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_8844:10503..10997(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF115 | ||
Ensembl ID: | ENSPVAG00000014487 | ||
Aliases: | None | ||
Description: | ring finger protein 115 [Source:HGNC Symbol;Acc:18154] |
Percent Identity: | 77.71 % |
Parental protein coverage: | 54.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | HFAEFWRNLDHTMIIQDFRPFLSSNPLDQDNRASERGHQTHTD-FWGPSRPPRLPMTRRYRSQGSTRPDR |
HFAE..RNL...MIIQDFRPFLS.NPLDQDNRA.E.GHQTHTD..WGPS...RLPMTRRYRSQGST...R | |
Retrocopy | HFAEVRRNLNLRMIIQDFRPFLSRNPLDQDNRANEGGHQTHTD<LWGPSQSSRLPMTRRYRSQGSTHLSR |
Parental | SPAIEGIIQQFFAGFFANSAVPGSPHPLSWSGLLHSNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKE |
SPA.E.II.QFFA..FANS.VP....P..WSG.LHSNPGDYAWG.TGLDAIVTQLL.QLENTGPP.ADK. | |
Retrocopy | SPAMERIILQFFADIFANSVVPRISIPFAWSGMLHSNPGDYAWGHTGLDAIVTQLLRQLENTGPPRADKG |
Parental | KITSLPTVTVTQEQVDTGLECSVCKE |
.ITSLPTVTVTQEQVD..LECSVCK. | |
Retrocopy | MITSLPTVTVTQEQVDKCLECSVCKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000009030 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002500 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003055 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014487 | 13 retrocopies | |
Tarsius syrichta | ENSTSYG00000004867 | 2 retrocopies |