RetrogeneDB ID: | retro_ecab_637 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 24:23263460..23264094(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK1 | ||
Ensembl ID: | ENSECAG00000009716 | ||
Aliases: | None | ||
Description: | cyclin-dependent kinase 1 [Source:HGNC Symbol;Acc:1722] |
Percent Identity: | 75.46 % |
Parental protein coverage: | 72.05 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | SMDLKKYLDSIPPGQFMDSSLVK-SYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDKGTIKLADFGLARA |
S.DLKKYLDSIPPGQFMDSSL.K...LYQILQ.IVF.H.RR.LHRD..PQNLLI.......LADFG.A.A | |
Retrocopy | SLDLKKYLDSIPPGQFMDSSLIK<DCLYQILQEIVFYHPRRALHRD*QPQNLLITNERL--LADFGFAGA |
Parental | FGIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSEIDQLFRIFRALGT |
FGIP.RVYTHEVVTL.YR.P.VLLGS..YSTPVDIWS..TIFAEL.TK.PL.HGDSE.D.LFRIFRAL.T | |
Retrocopy | FGIPLRVYTHEVVTLCYRPPQVLLGSTHYSTPVDIWSLDTIFAELVTK*PLCHGDSEVDRLFRIFRALDT |
Parental | PNNEVWPEVESLQDYKNTFPKWKPGSLASHVKNLDE-NGLDLLSKMLVYDPAKRISGKMALNHPYFNDLD |
.NNE.WPEV.SL..YKN.FPKWK.GS.ASHVKNL...NG.DLLSK.LVYDPAK...GK.ALNHP.FND.D | |
Retrocopy | LNNEAWPEVGSL*NYKNMFPKWKTGSPASHVKNLVK<NGSDLLSKVLVYDPAKQVAGKIALNHPCFNDSD |
Parental | NQIKKM |
NQIKKM | |
Retrocopy | NQIKKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .06 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .21 RPM |
SRP021940_embryo | 0 .00 RPM | 14 .68 RPM |
SRP021940_placental_villous | 0 .00 RPM | 3 .95 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 2 .88 RPM |
SRP021940_testis | 0 .00 RPM | 10 .87 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007001 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000005402 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018590 | 1 retrocopy | |
Equus caballus | ENSECAG00000009716 | 1 retrocopy |
retro_ecab_637 ,
|
Felis catus | ENSFCAG00000014972 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005793 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017091 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000632 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017549 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001085 | 2 retrocopies |