RetrogeneDB ID: | retro_rnor_1638 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:133195239..133196115(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cdk1 | ||
Ensembl ID: | ENSRNOG00000000632 | ||
Aliases: | Cdk1, Cdc2, Cdc2a | ||
Description: | Cyclin-dependent kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:P39951] |
Percent Identity: | 80.13 % |
Parental protein coverage: | 99.33 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MEDYIKIEKIGEGTYGVVYKGRHRTTGQIVAMKKIRLESEEEGVPSTAIREISLLKELRHPNIVSLQDVL |
.EDYIK.EK.GEGTYGVVY.GRHRTTGQ.VAMKKIRLES.EEG.PSTAIRE.SLLKEL.HPNIVSLQ.VL | |
Retrocopy | VEDYIKTEKSGEGTYGVVYEGRHRTTGQTVAMKKIRLESKEEGGPSTAIREVSLLKEL*HPNIVSLQGVL |
Parental | MQDS-RLYLIFEFLSMDLKKYLDSIPPGQFMDSSLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDDK |
MQDS.RLYLIFEFLSMDLKK.LD.IPPG.FMDS.L.KSYLYQILQG.VFCHSR..LHRDLKPQNLLIDDK | |
Retrocopy | MQDS<RLYLIFEFLSMDLKKHLDFIPPGHFMDS*LLKSYLYQILQGTVFCHSRQILHRDLKPQNLLIDDK |
Parental | GTIKLADFGLARAFGIPIRVYTHEVVTLWYRSPEVLLGSARYSTPVDIWSIGTIFAELATKKPLFHGDSE |
GTIKLAD.GL.RAFGIPIRVYT.EVV.LWYRSP.VLLGS..YSTP.DIWSIGTIFAEL.TKKPLFHGDSE | |
Retrocopy | GTIKLADSGLSRAFGIPIRVYTNEVVALWYRSPDVLLGSTCYSTPLDIWSIGTIFAELPTKKPLFHGDSE |
Parental | IDQLFRIFRALGTPNNEVWPEVESLQDYKNTF-PKWKPGSLASHVKNLDENGLDLLSKMLVYDPAKRISG |
.D.LF.IFR.LGTPNN..WPEVE.LQDYK.TF.P....G..ASH.K..D..GL..LSKMLVYDPA...SG | |
Retrocopy | TD*LFGIFRGLGTPNNKGWPEVEPLQDYKSTF>PNGSQG--ASHIKDRDD-GLAFLSKMLVYDPA**MSG |
Parental | KMALKHPYFDDLDNQIK |
K.AL.HP.FD.L.NQ.K | |
Retrocopy | KTALRHPSFDNLGNQVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .93 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .12 RPM |
SRP017611_liver | 0 .00 RPM | 0 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007001 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000005402 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018590 | 1 retrocopy | |
Equus caballus | ENSECAG00000009716 | 1 retrocopy | |
Felis catus | ENSFCAG00000014972 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005793 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017091 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000632 | 1 retrocopy |
retro_rnor_1638 ,
|
Tupaia belangeri | ENSTBEG00000017549 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000001085 | 2 retrocopies |