RetrogeneDB ID: | retro_eeur_138 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_8581:219286..219632(+) | ||
Located in intron of: | ENSEEUG00000000689 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAM16 | ||
Ensembl ID: | ENSEEUG00000007432 | ||
Aliases: | None | ||
Description: | presequence translocase-associated motor 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29679] |
Percent Identity: | 69.23 % |
Parental protein coverage: | 93.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MARYLAQIIVMGAQVVGRAFARALREEFAASRAAADARGRAGHQSA-AASNLTGLSLQEAQQILNVSKLN |
M.RYLAQ..VM..QVV..AF...L.EEFAAS.AAAD..G.A.HQSA.AAS.LT..SLQ.AQQILNVSKL. | |
Retrocopy | MVRYLAQVTVMVMQVVRTAFTYTLLEEFAASQAAADTQGCARHQSA>AASSLTTFSLQKAQQILNVSKLS |
Parental | PEEIQKNYQHLFKVNDKSVG-GSFYLQSKVVRAKERLDEELRIRAQE |
P..IQKNY.H.FK.N.KSVG..S.Y.QSKVV.AKERL.EELRI.AQ. | |
Retrocopy | P-KIQKNYEHMFKGNSKSVGSSSSYMQSKVVQAKERLEEELRIQAQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 11 .44 RPM |
SRP017611_kidney | 0 .75 RPM | 25 .69 RPM |
SRP017611_liver | 0 .00 RPM | 16 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009200 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019772 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010921 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000014888 | 1 retrocopy | |
Equus caballus | ENSECAG00000019387 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007432 | 7 retrocopies |
retro_eeur_138 , retro_eeur_171, retro_eeur_213, retro_eeur_234, retro_eeur_273, retro_eeur_440, retro_eeur_673,
|
Echinops telfairi | ENSETEG00000006416 | 1 retrocopy | |
Felis catus | ENSFCAG00000027971 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008921 | 6 retrocopies | |
Mus musculus | ENSMUSG00000014301 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004608 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000007947 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003461 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001347 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009306 | 1 retrocopy |