RetrogeneDB ID: | retro_mmus_73 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:43524167..43524545(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000045886 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pam16 | ||
Ensembl ID: | ENSMUSG00000014301 | ||
Aliases: | Pam16, 2010110I09Rik, AV006767, CGI-136, Magmas, Tim16, Timm16 | ||
Description: | presequence translocase-asssociated motor 16 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913699] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQILNVSKLSP |
MAKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQILNVSKLSP | |
Retrocopy | MAKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQILNVSKLSP |
Parental | EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELRIQAQEDREKGQKPKT |
EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELRIQAQEDREKGQKPKT | |
Retrocopy | EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELRIQAQEDREKGQKPKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 5 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .95 RPM |
SRP007412_heart | 0 .25 RPM | 9 .68 RPM |
SRP007412_kidney | 0 .08 RPM | 8 .89 RPM |
SRP007412_liver | 0 .00 RPM | 5 .33 RPM |
SRP007412_testis | 0 .27 RPM | 19 .39 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_3399 | 452 libraries | 106 libraries | 430 libraries | 75 libraries | 9 libraries |
TSS #2 | TSS_3400 | 106 libraries | 236 libraries | 614 libraries | 108 libraries | 8 libraries |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009200 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019772 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010921 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000014888 | 1 retrocopy | |
Equus caballus | ENSECAG00000019387 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007432 | 7 retrocopies | |
Echinops telfairi | ENSETEG00000006416 | 1 retrocopy | |
Felis catus | ENSFCAG00000027971 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008921 | 6 retrocopies | |
Mus musculus | ENSMUSG00000014301 | 1 retrocopy |
retro_mmus_73 ,
|
Rattus norvegicus | ENSRNOG00000004608 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000007947 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003461 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001347 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009306 | 1 retrocopy |