Parental gene: | PAM16, ENSEEUG00000007432 |
| Aliases: | None |
| Description: | presequence translocase-associated motor 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29679] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | GeneScaffold_3300:4816..9868(-) |
>ENSEEUG00000007432
ATGGCCAGGTACCTGGCCCAGATCATCGTGATGGGGGCACAGGTGGTGGGCAGGGCCTTCGCGCGCGCCCTGCGGGAAGA
GTTCGCAGCCAGCCGGGCAGCAGCTGACGCCCGGGGTCGTGCCGGACACCAGTCTGCAGCCGCCTCCAACCTCACTGGCC
TCAGCCTCCAGGAAGCCCAGCAGATTCTCAATGTCTCCAAGCTGAACCCTGAGGAAATCCAAAAGAATTATCAACACCTG
TTCAAGGTGAACGACAAGTCAGTAGGCGGCTCCTTCTACCTGCAGTCAAAGGTGGTCCGGGCAAAGGAGCGCCTGGATGA
GGAGCTGAGGATCCGGGCCCAAGAGGACAGAGGGAAAGAACCCCAAACGTGA
ATGGCCAGGTACCTGGCCCAGATCATCGTGATGGGGGCACAGGTGGTGGGCAGGGCCTTCGCGCGCGCCCTGCGGGAAGA
GTTCGCAGCCAGCCGGGCAGCAGCTGACGCCCGGGGTCGTGCCGGACACCAGTCTGCAGCCGCCTCCAACCTCACTGGCC
TCAGCCTCCAGGAAGCCCAGCAGATTCTCAATGTCTCCAAGCTGAACCCTGAGGAAATCCAAAAGAATTATCAACACCTG
TTCAAGGTGAACGACAAGTCAGTAGGCGGCTCCTTCTACCTGCAGTCAAAGGTGGTCCGGGCAAAGGAGCGCCTGGATGA
GGAGCTGAGGATCCGGGCCCAAGAGGACAGAGGGAAAGAACCCCAAACGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 16 .88 RPM |
| SRP017611_kidney | 25 .69 RPM |
| SRP017611_brain | 11 .44 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000009200 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000019226 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000019772 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000010921 | ortholog_one2many | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000014888 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000019387 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000006416 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000027971 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000008921 | ortholog_one2one | 6 retrogenes | |
| Mus musculus | ENSMUSG00000014301 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004608 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000007947 | ortholog_one2many | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000003461 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000001347 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000009306 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_138 | 69.23 | 93.50 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_171 | 80.95 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_213 | 71.62 | 58.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_eeur_234 | 83.95 | 65.85 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_eeur_273 | 85.60 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_eeur_440 | 82.79 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_eeur_673 | 76.42 | 99.19 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000007432 retrocopies