Parental gene:

PAM16, ENSCAFG00000019226

Aliases:PAM16, MAGMAS, TIMM16
Description:Canis lupus familiaris presequence translocase-associated motor 16 homolog (S. cerevisiae) (PAM16), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001003391]
Organism:Dog (Canis familiaris)
Coordinates:6:37040626..37047647(+)


>ENSCAFG00000019226
ATGGCCAAATACCTGGCCCAGATCATTGTGATGGGGGTGCAGGTGGTGGGCAGGGCCTTTGCCCGGGCCCTGCGGCAGGA
GTTTGCAGCCAGCCGGGCAGCAGCTGATGCTCGAGGACGTGCTGGACACCAGTCTGCAGCTGCCTCCAACCTGTCTGGCC
TCAGCCTCCAAGAGGCCCAGCAGATTCTCAATGTCTCCAAGCTGAGCCCGGAGGAGATCCAAAAGAATTACGAACACCTG
TTCAAGGTGAACGATAAATCCGTGGGTGGCTCCTTCTACCTGCAGTCCAAGGTGGTCCGAGCTTGGGAGCGCCTGCAGGA
GGAGCTCAGGATCCAGGCCCAGGAGGACAGAGAGAAGGAGCAGATGCCCAAAACGTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 27 .72 RPM
SRP017611_brain 10 .32 RPM
SRP017611_kidney 32 .56 RPM
SRP017611_liver 9 .43 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009200 ortholog_one2one 1 retrogene
retro_btau_1664,
Callithrix jacchus ENSCJAG00000019772 ortholog_one2one 1 retrogene
retro_cjac_1148,
Dasypus novemcinctus ENSDNOG00000010921 ortholog_one2many 2 retrogenes
retro_dnov_1361, retro_dnov_8,
Dipodomys ordii ENSDORG00000014888 ortholog_one2one 1 retrogene
retro_dord_81,
Equus caballus ENSECAG00000019387 ortholog_one2one 1 retrogene
retro_ecab_302,
Erinaceus europaeus ENSEEUG00000007432 ortholog_one2one 7 retrogenes
retro_eeur_138, retro_eeur_171, retro_eeur_213, retro_eeur_234, retro_eeur_273, retro_eeur_440, retro_eeur_673,
Echinops telfairi ENSETEG00000006416 ortholog_one2one 1 retrogene
retro_etel_2070,
Felis catus ENSFCAG00000027971 ortholog_one2one 1 retrogene
retro_fcat_520,
Myotis lucifugus ENSMLUG00000008921 ortholog_one2one 6 retrogenes
retro_mluc_2446, retro_mluc_2447, retro_mluc_2448, retro_mluc_2516, retro_mluc_2517, retro_mluc_429,
Mus musculus ENSMUSG00000014301 ortholog_one2many 1 retrogene
retro_mmus_73,
Rattus norvegicus ENSRNOG00000004608 ortholog_one2one 1 retrogene
retro_rnor_713,
Sus scrofa ENSSSCG00000007947 ortholog_one2many 2 retrogenes
retro_sscr_1090, retro_sscr_468,
Ictidomys tridecemlineatus ENSSTOG00000003461 ortholog_one2one 1 retrogene
retro_itri_1732,
Tupaia belangeri ENSTBEG00000001347 ortholog_one2one 1 retrogene
retro_tbel_3190,
Tarsius syrichta ENSTSYG00000009306 ortholog_one2one 1 retrogene
retro_tsyr_282,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1967 63.22 69.60
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Download FASTA sequences of all ENSCAFG00000019226 retrocopies