RetrogeneDB ID: | retro_mluc_2448 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430423:386969..387335(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAM16 | ||
Ensembl ID: | ENSMLUG00000008921 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.35 % |
Parental protein coverage: | 98.4 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | AKYLAQIIVMGAQVVGRAFARALRQEFAASRAAADARGRAGHQSAAASNLSGLSLQEAQQILNVSKLNPE |
A.YLAQ..VMGAQ.......R.L....AAS.AAA.A.G.A..QS.A....S..SLQ.AQQI.NV.KLNPE | |
Retrocopy | AIYLAQTTVMGAQSGEQGLCRILKPK*AASWAAANALGYARPQSVAPLT-SSESLQGAQQIVNVLKLNPE |
Parental | EIQKKYEHLFKVNDKSVGGSFYLQSKVVRAKERLEEELRIQAQEDREKEKRPQ |
EIQK..EHLFKVN.KSVG....LQSKVV.AK..L.EE....AQE..E.EKRP. | |
Retrocopy | EIQKN*EHLFKVNTKSVGSFLHLQSKVVPAKVHLQEEVTV*AQEGKEREKRPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009200 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000019226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019772 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010921 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000014888 | 1 retrocopy | |
Equus caballus | ENSECAG00000019387 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007432 | 7 retrocopies | |
Echinops telfairi | ENSETEG00000006416 | 1 retrocopy | |
Felis catus | ENSFCAG00000027971 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000008921 | 6 retrocopies |
retro_mluc_2446, retro_mluc_2447, retro_mluc_2448 , retro_mluc_2516, retro_mluc_2517, retro_mluc_429,
|
Mus musculus | ENSMUSG00000014301 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004608 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000007947 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003461 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001347 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009306 | 1 retrocopy |