RetrogeneDB ID: | retro_eeur_231 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_215002:4908..5175(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GCSH | ||
Ensembl ID: | ENSEEUG00000009653 | ||
Aliases: | None | ||
Description: | glycine cleavage system protein H (aminomethyl carrier) [Source:HGNC Symbol;Acc:4208] |
Percent Identity: | 56.99 % |
Parental protein coverage: | 52.02 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | NMRAALCSLRAA-SAPAAQSPLRPRRLHAGAVRTLCTG-SALLSVRKFT-DKHEWITTENGIGTVGISNF |
.M..ALCSL..A..AP....PL.P.RLHAG....L....SALLSV..F...KHEWI..EN.I.TV.IS.. | |
Retrocopy | SM*PALCSLLTA<LAPGELRPLLPCRLHAGTLCMLSPA<SALLSVGEFK<GKHEWIIKENCIETVSISSV |
Parental | AQEALGDVVYCSLPEVGTKLNKQ |
AQEALGD.V.C.LPE.GT..NK. | |
Retrocopy | AQEALGDGV*CRLPEAGTEWNKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 4 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .19 RPM |
SRP017611_liver | 0 .00 RPM | 13 .34 RPM |