RetrogeneDB ID: | retro_chof_1705 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_36311:16697..17077(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GCSH | ||
Ensembl ID: | ENSCHOG00000002434 | ||
Aliases: | None | ||
Description: | glycine cleavage system protein H (aminomethyl carrier) [Source:HGNC Symbol;Acc:4208] |
Percent Identity: | 78.46 % |
Parental protein coverage: | 74.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PALLSVRKFTDKHEWITTENGIGTVGISNFAQEALGNVVYCSLPE-VGTKLNKQEEFGALESVKAASELY |
P.LLSV.KFTDK......ENG.G..GISNFAQEAL..VVYCSLP..VGTKL.....F.ALESVKAASELY | |
Retrocopy | PSLLSVWKFTDKRDG*L-ENGTGALGISNFAQEALRDVVYCSLPG<VGTKLTNKV-FCALESVKAASELY |
Parental | SPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSNPSELDELMSEEAYEKYIKSIEE |
SPLSG.VTEINEALAENPGLVNK.C.EDGWLIK.TLSNPSELD.LMSEEAYEKY.KS.EE | |
Retrocopy | SPLSGKVTEINEALAENPGLVNKPCHEDGWLIKVTLSNPSELDKLMSEEAYEKYVKSMEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |