RetrogeneDB ID: | retro_fcat_215 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:1889786..1890142(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013038 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.69 % |
Parental protein coverage: | 71.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VRKFTDKHEWITTENGIGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFG-ALESVKAASELYSPLSG |
V.KFTDKHEW.TTENG.G..G.SNFAQEALGDVV.CSLPEVGTKLNKQ.EFG..LESV.AA.ELYSPLSG | |
Retrocopy | VHKFTDKHEWVTTENGTGAGGASNFAQEALGDVVHCSLPEVGTKLNKQHEFG<SLESVNAARELYSPLSG |
Parental | EVTEINEALAENPGLVNKSCYEDGWLIKITLSNPSELDELMSEEAYEKYIKS |
EVTEINEALAENPGLV.KSCYEDGWLIKITLSNP.E..E.M.....EK.... | |
Retrocopy | EVTEINEALAENPGLVSKSCYEDGWLIKITLSNPPEPCEVM--RSNEKHVRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 11 .71 RPM |
SRP017611_kidney | 0 .00 RPM | 85 .54 RPM |
SRP017611_liver | 0 .20 RPM | 53 .88 RPM |