RetrogeneDB ID: | retro_btau_1483 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 6:16795471..16795963(-) | ||
Located in intron of: | ENSBTAG00000034501 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GCSH | ||
Ensembl ID: | ENSBTAG00000006795 | ||
Aliases: | None | ||
Description: | Glycine cleavage system H protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20821] |
Percent Identity: | 100. % |
Parental protein coverage: | 94.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RAAVGGLRAISAPSAPCLPRPWGLRAGAVRELRTGPALLSVRKFTEKHEWVTTENGVGTVGISNFAQEAL |
RAAVGGLRAISAPSAPCLPRPWGLRAGAVRELRTGPALLSVRKFTEKHEWVTTENGVGTVGISNFAQEAL | |
Retrocopy | RAAVGGLRAISAPSAPCLPRPWGLRAGAVRELRTGPALLSVRKFTEKHEWVTTENGVGTVGISNFAQEAL |
Parental | GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTF |
GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTF | |
Retrocopy | GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTF |
Parental | SNPSELDELMSEEAYEKYIKSIEE |
SNPSELDELMSEEAYEKYIKSIEE | |
Retrocopy | SNPSELDELMSEEAYEKYIKSIEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 1 .87 RPM | 25 .74 RPM |
ERP005899_muscle | 0 .05 RPM | 12 .77 RPM |
SRP017611_brain | 0 .09 RPM | 4 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .99 RPM |
SRP017611_liver | 0 .38 RPM | 5 .74 RPM |
SRP030211_testis | 0 .09 RPM | 12 .52 RPM |