RetrogeneDB ID: | retro_eeur_331 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_257406:6413..6880(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000006417 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.25 % |
Parental protein coverage: | 71.1 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPR-VYCENQPMLPIGLSDIP |
EEL.D.PNQSDLIEQ.AEMLYGLIH.RYILTN.GI.QMLEKYQQGDFGY....VYC.NQ.M....LSDIP | |
Retrocopy | EELQDSPNQSDLIEQTAEMLYGLIHTRYILTNQGITQMLEKYQQGDFGYYYSCVYCQNQSMFFTSLSDIP |
Parental | GEAMVKLYCPKCMDVYTPK-SSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAY |
GEAMVKL.CPKC.DVY.P..SS..HH..G.YF.T.FPHM..M.HPEY.PK.PAN.FVP.L.G.KIH.MAY | |
Retrocopy | GEAMVKLTCPKCTDVYIPN<SSLYHHMGGVYFSTAFPHMHSMLHPEYWPKQPAN*FVPWLCGVKIHLMAY |
Parental | QLQLQAASNFKSPVKTI |
QL...AASN.KSPVKTI | |
Retrocopy | QL*V*AASNIKSPVKTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .45 RPM | 34 .81 RPM |
SRP017611_kidney | 0 .38 RPM | 96 .96 RPM |
SRP017611_liver | 0 .00 RPM | 64 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005751 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002996 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018728 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014179 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006417 | 2 retrocopies |
retro_eeur_331 , retro_eeur_555,
|
Echinops telfairi | ENSETEG00000015168 | 3 retrocopies | |
Felis catus | ENSFCAG00000007642 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004095 | 10 retrocopies | |
Monodelphis domestica | ENSMODG00000015287 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000011129 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023483 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000012138 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000001478 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000001414 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014103 | 2 retrocopies |