RetrogeneDB ID: | retro_etel_271 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_4548:81456..81913(+) | ||
Located in intron of: | ENSETEG00000013254 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000015168 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.11 % |
Parental protein coverage: | 66.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPG |
EELEDNPNQ...IEQAAEML.GLIH.RYI.TN.GI.QMLEKYQQGDFGYC.RVYCENQPMLP.GLSD.PG | |
Retrocopy | EELEDNPNQ---IEQAAEMLRGLIHSRYIFTNHGITQMLEKYQQGDFGYCARVYCENQPMLPFGLSDVPG |
Parental | EAMVKLYCPK-CMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVH-PEYRPKRPANQFVPRLYGFKIHPMAY |
EAMVKLYCP...MDV.TPKS.R.H..DG.YFG.GFPH.L..VH.P.Y...RP..QFVPRLYG..IHPMAY | |
Retrocopy | EAMVKLYCPR<IMDVFTPKSFRWHRLDGTYFGIGFPHILLVVH<PKY*SSRPVHQFVPRLYGLNIHPMAY |
Parental | QLQLQAASNFKSPVKTIR |
QLQLQAASNFKSPVKTIR | |
Retrocopy | QLQLQAASNFKSPVKTIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005751 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002996 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018728 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014179 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006417 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015168 | 3 retrocopies |
retro_etel_225, retro_etel_271 , retro_etel_769,
|
Felis catus | ENSFCAG00000007642 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004095 | 10 retrocopies | |
Monodelphis domestica | ENSMODG00000015287 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000011129 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023483 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000012138 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000001478 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000001414 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014103 | 2 retrocopies |