RetrogeneDB ID: | retro_eeur_555 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_343814:62733..63187(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSEEUG00000006417 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.51 % |
Parental protein coverage: | 71.1 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDF-GYCPRVYCENQPMLPIGLSDIP |
EELED.PNQSDLI.QAAE.LYGLIHA.YILTN.GIAQML.KY.QGDF.GY...VYCENQ...P..LSDI. | |
Retrocopy | EELEDIPNQSDLIKQAAEILYGLIHAHYILTN*GIAQMLGKYHQGDF>GYYLHVYCENQ---PVSLSDIS |
Parental | GEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMAYQ |
GEAMVKL.CP.C..V....SS..HHT.G.Y.GT.FPHM.FMVH.EY..K.PA..FV.RL.GFKIHP.A.Q | |
Retrocopy | GEAMVKL*CPNCWVVHS-QSSWYHHTNGTYLGTSFPHMFFMVHLEYWLKWPAKYFVFRLCGFKIHPTAFQ |
Parental | LQLQAASNFKSPVKTI |
L.LQA.SNFK..VKTI | |
Retrocopy | L*LQASSNFKTSVKTI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 34 .81 RPM |
SRP017611_kidney | 1 .13 RPM | 96 .96 RPM |
SRP017611_liver | 0 .48 RPM | 64 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005751 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002996 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000018728 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014179 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000006417 | 2 retrocopies |
retro_eeur_331, retro_eeur_555 ,
|
Echinops telfairi | ENSETEG00000015168 | 3 retrocopies | |
Felis catus | ENSFCAG00000007642 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004095 | 10 retrocopies | |
Monodelphis domestica | ENSMODG00000015287 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000011129 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023483 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000012138 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000001478 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000001414 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000014103 | 2 retrocopies |