RetrogeneDB ID:

retro_ttru_1595

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_48:21802..22267(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000014103
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1595
GAAGAGCTGGAAGACAACCCCAACCAGAGAACCCTGATTAAGCAGTCAGCCAAGATGCTGTATGGGTTCACCCAGACCAC
CTATATCCTCACAAACCATGGCACCACCCAGGTGTTGGAAAAGTACCAGCAGGGAGAGTTCGGCTACTGCCCCACATGCA
CTGTGAGAACAAGCCAATGCTTTCCAATAGCCTTTCTGACACCCCAGGTGAGGCCCTGGTGAAGCTCTACTGCCCCAAGT
GCATGGACAATTCCACACCTAAGACACCATCAAGGCAGCACCACACAGAAGGCCCCTACTTGGGTACCAGTTTCCCTCAC
ATTGCTCTTCATGGTGCATGCTGAATGCCGGCCCAAGCAGCCCACTAACCAGTTTATGTCCAAAGTGTACAGTTGCAAGA
TCCATCCACTGTCCTACCAGGTGCAGTTCCAAGCTGCCAGCAACTTTGAGTCTGTCAAGACCGTT

ORF - retro_ttru_1595 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 66.46 %
Parental protein coverage: 65.96 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYC-PRVYCENQPMLPIGLSDIP
EELEDNPNQ..LI.Q.A.MLYG.....YILTN.G..Q.LEKYQQG.FGYC.P...CEN.PML...LSD.P
RetrocopyEELEDNPNQRTLIKQSAKMLYGFTQTTYILTNHGTTQVLEKYQQGEFGYC<PHMHCENKPMLSNSLSDTP
ParentalGEAMVKLYCPKCMDVYTPKS-SRHHHTDGAYFGTGFPH-MLFMVHPEYRPKRPANQFVPRLYGFKIHPMA
GEA.VKLYCPKCMD..TPK..SR.HHT.G.Y.GT.FPH..LFMVH.E.RPK.P.NQF....Y..KIHP..
RetrocopyGEALVKLYCPKCMDNSTPKTPSRQHHTEGPYLGTSFPH>LLFMVHAECRPKQPTNQFMSKVYSCKIHPLS
ParentalYQLQLQAASNFKSPVKTI
YQ.Q.QAASNF.S.VKT.
RetrocopyYQVQFQAASNFES-VKTV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1595 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1595 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 35 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000057511 retrocopy
Bos taurus ENSBTAG000000088371 retrocopy
Callithrix jacchus ENSCJAG000000029961 retrocopy
Dasypus novemcinctus ENSDNOG000000187281 retrocopy
Dipodomys ordii ENSDORG000000141791 retrocopy
Erinaceus europaeus ENSEEUG000000064172 retrocopies
Echinops telfairi ENSETEG000000151683 retrocopies
Felis catus ENSFCAG000000076422 retrocopies
Macropus eugenii ENSMEUG0000000409510 retrocopies
Monodelphis domestica ENSMODG000000152874 retrocopies
Mustela putorius furoENSMPUG000000111291 retrocopy
Oryctolagus cuniculus ENSOCUG000000234832 retrocopies
Ochotona princeps ENSOPRG000000121381 retrocopy
Sarcophilus harrisii ENSSHAG000000014782 retrocopies
Sus scrofa ENSSSCG000000014141 retrocopy
Tursiops truncatus ENSTTRG00000014103 2 retrocopies
retro_ttru_1595 , retro_ttru_1740,



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